DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and rnp-9

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001359585.1 Gene:rnp-9 / 182350 WormBaseID:WBGene00007396 Length:312 Species:Caenorhabditis elegans


Alignment Length:126 Identity:40/126 - (31%)
Similarity:57/126 - (45%) Gaps:22/126 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VRKRRNPFNTQRLKEEKERRQK------------KRARLIVRNISYKSTEDSLREHFGQWGTLED 76
            :.||....|....|..:|.|.|            ....:.|.|||.::|:..||:.|..:|.:.:
 Worm   153 IGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAE 217

  Fly    77 VHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYV---SKNP 134
            |.|.     |....|||:||....|||||:..||||:.|.:|...|  |:.:.|   :.||
 Worm   218 VRIF-----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSW--GRTQAVPNQALNP 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 29/74 (39%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
rnp-9NP_001359585.1 RRM2_TIA1_like 88..162 CDD:409789 2/8 (25%)
RRM_SF 189..259 CDD:473069 29/76 (38%)
Blue background indicates that the domain is not in the aligned region.

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