DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and Ncl

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_035010.3 Gene:Ncl / 17975 MGIID:97286 Length:707 Species:Mus musculus


Alignment Length:601 Identity:121/601 - (20%)
Similarity:210/601 - (34%) Gaps:195/601 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 KDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAE---------------VGKEDESSGE 175
            :||...::..|||.|::      :||:..|:||.|.:.|:               |.:|::...|
Mouse   190 EDEEDDEDEDDEEDDDE------EEEDDSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEEDDEEE 248

  Fly   176 DSDAESGEDEEDSGESEDEENDEDHK------ENKDELKSKLDIKNVKREKQISNDVQEGCTVFI 234
            |.|.|..:|||:..|.:|||.:|:..      :.|.|:..:.:....|::|...::......:||
Mouse   249 DEDDEDEDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFI 313

  Fly   235 KNVPFDAEDADLRKACRKFGLVSYAIINRQAV----SGHSKGTAFVKFKAKESADLCLQA----- 290
            .|:..:....:|     ||.:......|..||    :|.::...:|.|::.|..:..|:.     
Mouse   314 GNLNPNKSVNEL-----KFAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKV 373

  Fly   291 -GTEFKL-------MDEVLDPHPALSR--------EEMKS---------KQSQENK--------- 321
             |.|.||       ..:|......|::        :|:|.         ..||:.|         
Mouse   374 FGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEF 438

  Fly   322 KDDAKDSRNLYLAREGLIMAGAKAADGVSAS-----DMAKRHELE--------QVKTQVLKNLNR 373
            |.:|...:||...:      ||: .||.|.|     :..:|.|..        :.||.||.||:.
Mouse   439 KSEADAEKNLEEKQ------GAE-IDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSY 496

  Fly   374 FVSRNRLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQ 438
            ..::..|           |::.:.| |:.             || |::|.||.||:.|:.|.:.:
Mouse   497 SATKETL-----------EEVFEKA-TFI-------------KV-PQNPHGKPKGYAFIEFASFE 535

  Fly   439 RALAALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERRQQK 503
            .|..||...|.              ..||.|.:                        |.|.:...
Mouse   536 DAKEALNSCNK--------------MEIEGRTI------------------------RLELQGSN 562

  Fly   504 RNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDVQG----DFVGTAAKPGTS 564
            ...|.:||...:..::...::.:|:   |.......::...::....:|    ||       .:.
Mouse   563 SRSQPSKTLFVKGLSEDTTEETLKE---SFEGSVRARIVTDRETGSSKGFGFVDF-------NSE 617

  Fly   565 LKMRSKKKIVEQAKEHLKKVKTEKRKQKNKKIRESHLAERKANNRPKQGRKKETDDLRPLINKYK 629
            ...::.|:.:|..:....||..:..|.|.    |.....|........||               
Mouse   618 EDAKAAKEAMEDGEIDGNKVTLDWAKPKG----EGGFGGRGGGRGGFGGR--------------- 663

  Fly   630 NMISGNQGGGGVTGGK 645
               .|.:||.|..||:
Mouse   664 ---GGGRGGRGGFGGR 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 20/107 (19%)
RRM4_RBM28_like 379..468 CDD:409850 19/88 (22%)
PTZ00121 <473..>622 CDD:173412 20/152 (13%)
NclNP_035010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..308 31/123 (25%)
PRK13808 <12..142 CDD:172341
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 309..383 CDD:409837 18/78 (23%)
RRM2_NCL 392..467 CDD:409838 16/81 (20%)
RRM3_NCL 486..558 CDD:409839 28/135 (21%)
RRM4_NCL 569..646 CDD:409840 12/86 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..707 12/60 (20%)
Blue background indicates that the domain is not in the aligned region.

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