DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and sgnh-1

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_500666.2 Gene:sgnh-1 / 177260 WormBaseID:WBGene00020354 Length:177 Species:Caenorhabditis elegans


Alignment Length:147 Identity:34/147 - (23%)
Similarity:63/147 - (42%) Gaps:8/147 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 EEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKA 249
            :..:..:||....|:.:..|..|.:.........|:|...|.:   :|::.||.:.:..:::.:.
 Worm     4 QRSNNSNEDFVTAEEMELLKQALSASKKYMAPTAEEQEKTDAR---SVYVGNVDWKSTVSEIEEH 65

  Fly   250 CRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCL-QAGTEF---KLMDEVLDPH-PALSR 309
            ....|.|:...|.:...:|:.|..|||:|:..||..|.| .:||.|   |:|..:...: |.:.|
 Worm    66 FAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGR 130

  Fly   310 EEMKSKQSQENKKDDAK 326
            .....|.:...|....|
 Worm   131 TATAQKPAHFAKSSHGK 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 23/87 (26%)
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
sgnh-1NP_500666.2 RRM_II_PABPs 47..119 CDD:409747 21/71 (30%)
Blue background indicates that the domain is not in the aligned region.

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