DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and SNRNP35

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_851030.1 Gene:SNRNP35 / 11066 HGNCID:30852 Length:251 Species:Homo sapiens


Alignment Length:165 Identity:36/165 - (21%)
Similarity:70/165 - (42%) Gaps:18/165 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LIVRNISYKSTEDSLREHFGQWGTLEDVHILK---RGDGKLVGCAFVQYETINQATKAILNSNGK 111
            |.|..::.::.||.|:|.|.::|.:..:.:::   .|..|  |.||::|:......||..:::|.
Human    58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSK--GYAFIEYKEERAVIKAYRDADGL 120

  Fly   112 ELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGD------EKEVKEESDAEVGKED 170
            .:...::|||:.|      .:..|...|......:..|:|:|.      ::..::..:..|.|.|
Human   121 VIDQHEIFVDYEL------ERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKND 179

  Fly   171 -ESSGEDSDAESGEDEEDSGESEDEENDEDHKENK 204
             ...|:....|.....|...:|...:.|.|....|
Human   180 LYREGKRERRERSRSRERHWDSRTRDRDHDRGREK 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 20/76 (26%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
SNRNP35NP_851030.1 RRM_snRNP35 52..142 CDD:409683 22/91 (24%)
Blue background indicates that the domain is not in the aligned region.

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