DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pof and bru1

DIOPT Version :10

Sequence 1:NP_523851.1 Gene:Pof / 37947 FlyBaseID:FBgn0035047 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_723737.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster


Alignment Length:250 Identity:54/250 - (21%)
Similarity:94/250 - (37%) Gaps:51/250 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 TPAGSQLLPWKTSVDLDND-----AELEKPTSDKKPDTAKLSRRELAKMRREHTLRALA--LERE 120
            |||..|||....:|.|.:.     ..|....|....||:.::...|........|.|:|  .:..
  Fly   581 TPASIQLLQQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPS 645

  Fly   121 LTN---------KPG--QTPASEVLLVRFPDPEITAPM--LAGLSKDIRDVVLPISVAPRYCLVH 172
            |:|         .||  |...:..||...|:|..:|.|  .|||.:  ......:|.:| ...|.
  Fly   646 LSNAAAAAAAATSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQ--FGSASALSTSP-LASVA 707

  Fly   173 LKAGADVEATICDINRVRFGTGHLRAELKPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAY--- 234
            |.|.|...|                        .:|.|..:.|:|::.::|...|.:.:.:.   
  Fly   708 LSAAAAAAA------------------------GKQIEGPEGCNLFIYHLPQEFTDTDLASTFLP 748

  Fly   235 FANAMRVDIGVLKREKRAR-YAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRR 288
            |.|.:...:.:.|:...:: :.||.:.:||....|.|.:....:.::.|.|:.::
  Fly   749 FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PofNP_523851.1 RRM_SF 217..285 CDD:409669 13/71 (18%)
bru1NP_723737.1 RRM1_CELF1_2_Bruno 356..437 CDD:410040
SF-CC1 <435..789 CDD:273721 52/234 (22%)
RRM_SF 443..524 CDD:473069
RRM3_Bruno_like 722..800 CDD:241084 14/77 (18%)
Blue background indicates that the domain is not in the aligned region.

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