DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pof and bru2

DIOPT Version :10

Sequence 1:NP_523851.1 Gene:Pof / 37947 FlyBaseID:FBgn0035047 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster


Alignment Length:257 Identity:53/257 - (20%)
Similarity:92/257 - (35%) Gaps:59/257 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 HLRAELKPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREKRAR---YAF 256
            |...::||...|.:.|    ..|:||.:....|.:.::..|.....::...:.|::..:   .||
  Fly   366 HHPIQMKPADSENRNE----RKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAF 426

  Fly   257 VRYASPDQTMEAFKELVDSPLN---SRTLTVRYRRLRKRAGMPMVQCATSFQALQSPNG------ 312
            |.:|:....:.|.|.|..|...   |..|.|::...:|......:|...:|..:.:|:|      
  Fly   427 VTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQIHAFCGINTPSGATAGAA 491

  Fly   313 -DDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGKRKKKINEQEREIEKLKRQMAEYGAII 376
             ...|....:|:.||              |:|                    :....||...|.:
  Fly   492 TPTINAATALIAAPP--------------SAG--------------------RTNPSMAAALAAV 522

  Fly   377 KSLQFRQN--SLEDTFIP-DLTPKVEPSVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPA 435
            ..:|...:  :...|.:| :.|..:..|:.|.  ||.:||.|  :.......||| .||..|
  Fly   523 PQVQQAGSAATAPTTLVPLNSTTALSASLTPN--LLATNAAH--QGAAAAAAYLG-ADPAAA 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PofNP_523851.1 RRM_SF 217..285 CDD:409669 16/73 (22%)
bru2NP_001036356.1 RRM_SF 294..375 CDD:473069 3/8 (38%)
RRM_SF 381..461 CDD:473069 18/83 (22%)
RRM_SF 801..892 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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