DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pof and celf2

DIOPT Version :10

Sequence 1:NP_523851.1 Gene:Pof / 37947 FlyBaseID:FBgn0035047 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_012813883.1 Gene:celf2 / 100125022 XenbaseID:XB-GENE-963640 Length:559 Species:Xenopus tropicalis


Alignment Length:211 Identity:41/211 - (19%)
Similarity:78/211 - (36%) Gaps:52/211 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 PDPEITAPMLAG------LSKDIRDVVLPISVAPRY----------------CLVHL---KAGAD 178
            |||: ...|..|      ..|:::|:..|.....:.                |.|..   ||..:
 Frog    64 PDPD-AIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALE 127

  Fly   179 VEATICDINRVRFGTG-HLRAELKPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFA------ 236
            .:..:.:|..:   .| |...::|| :|.|::..::...|::|.:......:.|:..|:      
 Frog   128 AQNALHNIKTL---PGMHHPIQMKP-ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 188

  Fly   237 --NAMRVDIGVLKREKRARYAFVRYASPDQTMEAFKELVDSPLN---SRTLTVRY---------R 287
              ..:|...| |.|..:...|||.:::......|.|.:..|...   |..:.|::         |
 Frog   189 ECRILRGPDG-LSRASQHCCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQR 252

  Fly   288 RLRKRAGMPMVQCATS 303
            ||:::....|.|..|:
 Frog   253 RLQQQLAQQMQQLNTA 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PofNP_523851.1 RRM_SF 217..285 CDD:409669 15/78 (19%)
celf2XP_012813883.1 RRM1_CELF1_2_Bruno 68..151 CDD:410040 14/86 (16%)
RRM2_CELF1_2 160..244 CDD:410042 16/84 (19%)
RRM3_CELF1_2 469..558 CDD:241082
Blue background indicates that the domain is not in the aligned region.

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