DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42360 and Regnase-1

DIOPT Version :10

Sequence 1:NP_611946.2 Gene:CG42360 / 37937 FlyBaseID:FBgn0259742 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_650863.3 Gene:Regnase-1 / 42394 FlyBaseID:FBgn0038769 Length:540 Species:Drosophila melanogaster


Alignment Length:258 Identity:94/258 - (36%)
Similarity:134/258 - (51%) Gaps:50/258 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 PFREGEKQRRARPAKTPNKKTARMNDSFFTTEEKKKLGDYNTNTFN------------------- 326
            |.|:.|.......:::|::.|.|.|..|     .|||| |:..:.:                   
  Fly    36 PVRKQESCSDDDESQSPSRTTERQNLEF-----AKKLG-YSEQSIHSALTRLGSEAKQNELLAEL 94

  Fly   327 ---------PTEEAGEASNKPKTNK-------------RFVIIDGSNVAFAHGNSNVFSSEGIKY 369
                     |....|..|....|:.             |.::|||||||.:|||:.|||..||:.
  Fly    95 IKLTADAPRPAHIGGGGSPSSMTSTLSSPTGGSNSSGLRHIVIDGSNVALSHGNNLVFSCRGIRI 159

  Fly   370 CLQYFEKMGH-EVKAVVPMFRKN--NFKSSNPELLDKLHKEGKIVFTPCKNIPGQITSSYDDRFI 431
            |:.:|.:.|| ::.|.||.:||.  |...::.|||.:|..|..:||||.:::.|:..|.||||||
  Fly   160 CVDWFRQRGHRDITAFVPNWRKEMANNNIADQELLYELEHERYLVFTPSRHLDGKRVSCYDDRFI 224

  Fly   432 LQLAYEKNAAVVSNDNYRDLINENPAFKLIVENRVLGYSWCDNIFILPKDPYGRWGPTLDEIL 494
            |:||.|.:..|||||||||||.|:..|:.:|:.|:|.||:.::||:.|.||.||.||.||..|
  Fly   225 LKLAVETDGIVVSNDNYRDLILESNEFRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFL 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42360NP_611946.2 PIN_Zc3h12a-N4BP1-like 345..469 CDD:350286 62/126 (49%)
Regnase-1NP_650863.3 UBA_6 61..97 CDD:407876 6/41 (15%)
PIN_Zc3h12-like 135..263 CDD:350296 62/127 (49%)
Regnase_1_C 495..534 CDD:465803
Blue background indicates that the domain is not in the aligned region.

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