DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42360 and zc3h12b

DIOPT Version :10

Sequence 1:NP_611946.2 Gene:CG42360 / 37937 FlyBaseID:FBgn0259742 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_002931879.2 Gene:zc3h12b / 100495565 XenbaseID:XB-GENE-1216185 Length:854 Species:Xenopus tropicalis


Alignment Length:401 Identity:111/401 - (27%)
Similarity:175/401 - (43%) Gaps:80/401 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 RRLDFRRRESPEKKNALPKPKFYNPNKNDNKKEEGEIVTELDSSDDDDCVLLDTPNESISILDDE 192
            ::|:..:|  |.|:.|..|...|:.:..|...|..| .|..:|..:.....:.......::..:.
 Frog     8 KKLEMEKR--PSKERAAAKEMEYSQDLGDCSGESDE-WTSSESEAEQQIGRIGLGGYGNTLFKEV 69

  Fly   193 DDEPSTSDQLLKQIVMDCNGEAALRITPKTENAVLYSTIGKQ-NSSDSIINLDDTFEAVPSLVVD 256
            |.......||.:...:|         .|....:.:.:.|..| ...::..|||..::|.....:.
 Frog    70 DISSKPHRQLCRSPCLD---------RPSFSQSSIQAPIDNQIKLEEAKSNLDREYQAKMDFALK 125

  Fly   257 SNDSVIYIEDTTGEDFIPIPSYSPPFREGEKQRRARPAKTPNK--KTARMNDSFFTTEEKKKLGD 319
            ..        .|||....:                     .||  ..|.:||   ...|..:||:
 Frog   126 LG--------YTGEQIQAV---------------------LNKLGAEALIND---ILAELVRLGN 158

  Fly   320 YNTNTFNPTEEAGEASN--------------KPK-----------TNKRFVIIDGSNVAFAHGNS 359
            ...   :.|:.:|..|:              .|:           .|.|.::|||||||.:|||.
 Frog   159 KGE---SETQSSGSGSSGILVPRGPCTKEIASPELSLEDEILDNTENLRPIVIDGSNVAMSHGNK 220

  Fly   360 NVFSSEGIKYCLQYFEKMGH-EVKAVVPMFRKNNFKSSNP----ELLDKLHKEGKIVFTPCKNIP 419
            .|||..||:..:::|.:.|| ::...||.:||...:...|    |:|.||.||..:||||.:.:.
 Frog   221 EVFSCRGIQLAVEWFLEKGHKDITVFVPAWRKEQSRPDAPITEQEILRKLEKEKILVFTPSRRVQ 285

  Fly   420 GQITSSYDDRFILQLAYEKNAAVVSNDNYRDLINENPAFKLIVENRVLGYSWCDNIFILPKDPYG 484
            |:....||||||::||::.:..:|||||||||.||.|.:|..:|.|:|.||:.::.|:.|.||.|
 Frog   286 GRRVVCYDDRFIVKLAFDCDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLG 350

  Fly   485 RWGPTLDEILR 495
            |.||:|:..||
 Frog   351 RHGPSLENFLR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42360NP_611946.2 PIN_Zc3h12a-N4BP1-like 345..469 CDD:350286 58/128 (45%)
zc3h12bXP_002931879.2 UBA_6 116..157 CDD:407876 10/72 (14%)
PIN_Zc3h12-like 206..336 CDD:350296 58/129 (45%)
zf-CCCH_2 373..391 CDD:464217
Regnase_1_C 811..845 CDD:465803
Blue background indicates that the domain is not in the aligned region.

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