DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4707 and Prdm13

DIOPT Version :10

Sequence 1:NP_611944.1 Gene:CG4707 / 37935 FlyBaseID:FBgn0035036 Length:673 Species:Drosophila melanogaster
Sequence 2:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster


Alignment Length:502 Identity:93/502 - (18%)
Similarity:156/502 - (31%) Gaps:175/502 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 RIKNELPVDSDSDAPLADFLNSDSKRSSVGPAKNSEANKGRQLRRSARRGRPPKAKPESAPSPKK 223
            ||:..||  |.|..|.:  :.:.|..::: .|..|.|:..:::|.|  ..||.....:..|    
  Fly    21 RIEQLLP--STSITPTS--MTTSSTETTL-TATTSTASPAKRMRMS--NPRPGVYASQYTP---- 74

  Fly   224 ELDSEDGEENARDNNDMEFVAPEAVLG-----TDDSSSSSSESSGEDSDHSLPDIEPEERYAEIP 283
                       :|...|. :...|:||     ||.|.|....|:||                   
  Fly    75 -----------KDTCSMA-IPTSALLGSTVMPTDGSRSHCQLSNGE------------------- 108

  Fly   284 KRVVVKPKKYRKREKPLVPPVRLS-----------------REEIERRKLQQDEY-----DEIIL 326
              ::|.....|:        ::||                 |..:.|...::||.     :|::|
  Fly   109 --LIVSGSLLRQ--------IKLSEDVYSFNAIFELHGGQVRVRLVRDVAREDEIVAWFGEELVL 163

  Fly   327 ------------QFFKKFPCSLCNLLVQNFADMRRHQRVSHNIESGYIECCGRK------FHLRK 373
                        |...::.|.||:|..:....::.|..:.          |||.      ..|..
  Fly   164 LMGIPFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHLALG----------CGRSAMDILWMRLHY 218

  Fly   374 ALAEHVLVHKNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEPKEKRIYQCEKCPKSF---- 434
            ||......|....|   |........|.|...|     :|..:..|:...........:|.    
  Fly   219 ALKAAARSHTETQH---SPIPATSSTSSASPTH-----SPPPQMPPRFSAFRPIAALTQSLPMVP 275

  Fly   435 -TT-----------------------KAAMEYHDVSKHVPKSEFKYSCPECNKKIPTERKLKEHL 475
             ||                       .||.:...:..::..|:..:.|..|.|....:..||.|:
  Fly   276 VTTAATPLSYLPSMSMATAPLSTNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHI 340

  Fly   476 RYMHDPEAAIICDKCGKTLRSQTNLKKHHELEHSEKPRPKPDPVQCEICGTWLRHLSGLKQHMKT 540
            | .|.....:.|..|.:.....:||.||..|.....|...                :|:.....:
  Fly   341 R-THTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSS----------------AGVADGGAS 388

  Fly   541 VHEPPGD---------EHRCHICNKTSTNSRALKRHI------YHNH 572
            ..:..||         :::||:|:|:....|.|:||:      :|:|
  Fly   389 GADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHMETRHGGHHSH 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4707NP_611944.1 zf-AD 3..77 CDD:462262
C2H2 Zn finger 334..355 CDD:275368 5/20 (25%)
LIM <361..407 CDD:413332 11/51 (22%)
C2H2 Zn finger 365..382 CDD:275368 6/22 (27%)
C2H2 Zn finger 390..410 CDD:275368 4/19 (21%)
C2H2 Zn finger 427..443 CDD:275368 5/43 (12%)
COG5236 <455..>574 CDD:227561 29/133 (22%)
C2H2 Zn finger 458..476 CDD:275368 6/17 (35%)
C2H2 Zn finger 487..507 CDD:275368 6/19 (32%)
C2H2 Zn finger 521..540 CDD:275368 1/18 (6%)
C2H2 Zn finger 551..572 CDD:275368 9/26 (35%)
C2H2 Zn finger 580..600 CDD:275368
C2H2 Zn finger 608..629 CDD:275368
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 16/102 (16%)
C2H2 Zn finger 323..343 CDD:275368 7/20 (35%)
C2H2 Zn finger 351..371 CDD:275368 6/19 (32%)
zf-C2H2 406..427 CDD:395048 8/20 (40%)
C2H2 Zn finger 408..427 CDD:275368 8/18 (44%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.