DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pio and cutl-17

DIOPT Version :9

Sequence 1:NP_001163295.1 Gene:pio / 37929 FlyBaseID:FBgn0020521 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_001379101.1 Gene:cutl-17 / 185474 WormBaseID:WBGene00009541 Length:912 Species:Caenorhabditis elegans


Alignment Length:539 Identity:109/539 - (20%)
Similarity:178/539 - (33%) Gaps:184/539 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKTGTRMDAFHTALHLITIAALTTHAAQIPTAMKDAQSSLSDAIAAAEAEVASTSKPAVEPSVRI 65
            :|....:||.|.......|........:|...:.|.....|..|..:..|...||....|..|:.
 Worm   440 LKDNQAVDAVHGVTTTTNIGEKRETKVEIEETVIDDADEFSREIDDSHEESPLTSSEESEGRVKA 504

  Fly    66 K----CLSGSMLITIKDAPPNHETGLFSGMIYPKGLSKNSTCLSEYRDHVGSLRYKLPLRSCNT- 125
            :    |....:.:::|.|.|.      ||.||.|             ||..|.|...    .|| 
 Worm   505 RLSTECRMSGISVSLKFATPT------SGTIYIK-------------DHFSSCRQSF----SNTS 546

  Fly   126 -----MPKETDD----GGIEF------FNTIVLQPHLK---LITDLGRGYHVRC-----AYKSRD 167
                 :|..|:|    ||||.      :|.:|.:..:|   |:|...:.:.|.|     |.|::.
 Worm   547 FAELHIPFPTEDDSKCGGIESEPHKWDYNVVVERNDMKTPSLVTTKDKTFQVSCDFSKIADKNQL 611

  Fly   168 AAMKPKKYLRKHAQKPQAFRSDDRREYGRSLDKQQDDDLDEEDVYDANAPTQEEDVTNNEIPMPG 232
            ||:|||                                             .|.||.:.::.|  
 Worm   612 AALKPK---------------------------------------------VEGDVKSEKVLM-- 629

  Fly   233 CHMKIYNDEHKIADDVKIGDPLTIV-----IS-----IDKQKVYGLHVTDCIVRDGLGWGEQRLV 287
                         :.|:.|..:|.|     :|     ||:....|..:.:||.        :|:.
 Worm   630 -------------EIVRNGQAVTTVPLGAEVSLRWTVIDETDKLGFFINECIA--------ERVG 673

  Fly   288 GE-----------DGCPMD---NEIMGQFNYTQDRLAAN-----VTFPAHKFPYTTSVYYQCNVR 333
            |:           .|||.:   |.::      .|.:..|     ......:|..:..|..:|::.
 Worm   674 GQPPYPEPLKIIYQGCPEEKVRNRLL------HDPVVKNGEVYSTKMKVFRFDGSRRVRIKCSID 732

  Fly   334 LCALEDP--TCQEAP---QCSGKRPKRQAAADSKEEDGLPATIE--------VFSGLYVNENENA 385
            :|..:.|  .|.:..   ..|..|.||    :|..|..|.|..:        |...|.:.:.|..
 Worm   733 VCVEKCPPVICDDLEIRNVDSFGRKKR----NSNVEKWLKAGNKKETRKRRMVTGTLTITDEEET 793

  Fly   386 NDS----DEDAVYKEKTLDDALCVSQRTFAIAIAIAGLILMLAVVAAVL----CIMARRS--TKT 440
            |.:    .|.:.....:.....||.:......|.|..|:::|.:..|:.    |: :|.|  |.:
 Worm   794 NTTVKPRPEFSTSSSSSSQQQYCVQKDRIEFLIVIVVLLILLQIGLALFFYRKCV-SRSSMETSS 857

  Fly   441 VSNSGSSIYSGPYTNTAFS 459
            |.:.|||..|.  |::|::
 Worm   858 VYSEGSSRCSA--TSSAYN 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pioNP_001163295.1 ZP 66..349 CDD:214579 64/344 (19%)
Zona_pellucida <248..349 CDD:278526 24/134 (18%)
cutl-17NP_001379101.1 PAN_1 26..106 CDD:394981
PAN_AP_HGF 114..199 CDD:238532
PAN_AP 208..295 CDD:214680
PAN_AP_HGF 308..380 CDD:238532
Zona_pellucida 509..744 CDD:421542 63/331 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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