DRSC/TRiP Functional Genomics Resources

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Protein Alignment Start1 and Stard3nl

DIOPT Version :10

Sequence 1:NP_611936.2 Gene:Start1 / 37927 FlyBaseID:FBgn0035028 Length:583 Species:Drosophila melanogaster
Sequence 2:XP_030103314.1 Gene:Stard3nl / 76205 MGIID:1923455 Length:318 Species:Mus musculus


Alignment Length:251 Identity:90/251 - (35%)
Similarity:129/251 - (51%) Gaps:50/251 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 STAQLILANARQGNSAYNMQYDMSRAHSINLITEDFLAGYMQ----------------------- 52
            |.|:|:|  .|.|...:.:....||.:.:....|:.|.|...                       
Mouse    33 SPAKLLL--TRDGGVGWRLLQSSSRMNHLPEHMENTLTGSQSSHASLRDIHSINPAQLMARIESY 95

  Fly    53 DGR----MSVVRRFFCLFVTFDLVFVSLLWLICIVINGDNIFTAFHKQIVEYTIYKSLFDVVAVA 113
            :||    :|.|||.|||||||||:||:|||:|.:.:|| .|.....|:::.|..|.|.||:..:|
Mouse    96 EGREKKGISDVRRTFCLFVTFDLLFVTLLWIIELNVNG-GIENTLKKEVIHYDYYSSYFDIFLLA 159

  Fly   114 ICRFLVLIFFYAILYINHWSIIALSTSGSCLFLISKVFVFDWLDSK---QQVFEVILIITSFILA 175
            :.||.|||..||:..:.||..|||:|:.:..||::||.:     ||   |..|..:|.|.|||||
Mouse   160 VFRFKVLILGYAVCRLRHWWAIALTTAVTSAFLLAKVIL-----SKLFSQGAFGYVLPIISFILA 219

  Fly   176 WGEAWFLDCRVIPQERHAQHYFRTMTSNDRTPMEQPAILIEQERPPQSVTD--FYS 229
            |.|.||||.:|:|||  |:...|.:...|.:  |:.|::      |..::|  |||
Mouse   220 WIETWFLDFKVLPQE--AEEENRLLLVQDAS--ERAALI------PAGLSDGQFYS 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Start1NP_611936.2 MENTAL 57..233 CDD:463097 77/178 (43%)
SRPBCC 247..571 CDD:472699
Stard3nlXP_030103314.1 MENTAL 104..269 CDD:463097 77/178 (43%)
Blue background indicates that the domain is not in the aligned region.

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