DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3511 and PUB49

DIOPT Version :9

Sequence 1:NP_001286847.1 Gene:CG3511 / 37926 FlyBaseID:FBgn0035027 Length:637 Species:Drosophila melanogaster
Sequence 2:NP_201554.1 Gene:PUB49 / 836889 AraportID:AT5G67530 Length:595 Species:Arabidopsis thaliana


Alignment Length:648 Identity:152/648 - (23%)
Similarity:215/648 - (33%) Gaps:231/648 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 WIGPMPSEQSAPAPAKKKKVLPYEHIYLENLPNAESYERSYMHRDVITHLVCTKTDFVVTASLDG 102
            |.|....|...|.     |.|||....|..||..:.              |||         :||
plant    22 WGGAKSKENRTPF-----KSLPYYCCALTFLPFEDP--------------VCT---------IDG 58

  Fly   103 HI-----------KFWK--------KGELGIEFVKHFRS-----------------HLVPIKSLT 131
            .:           ||.|        |||..|..:.|..|                 |:|.:|:  
plant    59 SVFEITTIVPYIRKFGKHPVTGAPLKGEDLIPLIFHKNSEGEYHCPVLNKVFTEFTHIVAVKT-- 121

  Fly   132 TNDSGTLLCSAA---------------TDQTAKVFDVVNFDMINIIRLGYTPQCSEWINGPGDAV 181
               :|.:.|..|               |::.....|::.....|.:....|.:.....||     
plant   122 ---TGNVFCYEAIKELNIKTKNWKELLTEEPFTRADLITIQNPNAVDGKVTVEFDHVKNG----- 178

  Fly   182 QALAISDSESSRIHIYDGQGGGEALHTLEKLHSAPVVAMCLNVAMETVISVDRNGILEYWQNSKY 246
              |.|.|.|                  |:|::|.|.                      |..|...
plant   179 --LKIDDEE------------------LKKMNSDPA----------------------YNINVSG 201

  Fly   247 DYKFPQRLVNFDSKLDTSLFEFAKQKTQVTGLAATPDGKRFAAISTDR-KVRVFQFNTGKLIRVF 310
            |.|.....:..|...:.:|......|.:....||      .|||...| |:        |.:...
plant   202 DIKHMLADLGTDKAKEIALHGGGGNKARNERAAA------IAAILESRSKI--------KEVSKA 252

  Fly   311 DEALSTYTQMQQTKHALPNMEFGRRMAAER--DLEKTAQNATLNILFDSTGNFLLYPTMLGIKVI 373
            ::...||:.:.....::    |||...|.:  ..:|||....:::..|.|               
plant   253 EQPKQTYSVVDAASASV----FGRSADAAKAGSSDKTAARIAMHMAGDRT--------------- 298

  Fly   374 NVVTNRCVTILGKTDNIRPLQVALFQGRIKRQKAAITMEQEASENPALQNILNDPTAFCTAYKKS 438
                              |:...:.:.|.....|                              |
plant   299 ------------------PVNSKMVKSRYSSGAA------------------------------S 315

  Fly   439 RFYLYSRRLPSDLQDVDRDIFNEKPSKEDIIAVPEASVVQRIYENVVLHTTKGDIHMRLFFKEVP 503
            |.:..|...|....|.:.....:.|.|:..               |...||.||:::.|.....|
plant   316 RSFTSSAFTPVTKNDFELIKVEKNPKKKGY---------------VQFQTTHGDLNIELHCDIAP 365

  Fly   504 KTVENFCVHAKNGYYNGHIFHRVIKGFMVQTGDPTGTGTGGKSIWGSDFKDEFVPSLKHDRPYTV 568
            :..|||....:.|||||..|||.|:.||:|.|||||||.||:||||..||||....|.|.....|
plant   366 RACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFKDEPNSKLLHSGRGVV 430

  Fly   569 SMANAGPNTNGSQFFITVLPTPWLDNKHTVFGRVYRGMEVVLNICNSKANPKTDKPYDDIKII 631
            ||||:||:|||||||:.......|:.||||||.|..|:..:..:.|...: ::|:|.::||||
plant   431 SMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAMENVPVD-ESDRPLEEIKII 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3511NP_001286847.1 WD40 <75..>312 CDD:225201 49/288 (17%)
WD40 <79..300 CDD:295369 48/272 (18%)
WD40 repeat 85..122 CDD:293791 13/55 (24%)
WD40 repeat 128..176 CDD:293791 8/62 (13%)
WD40 repeat 181..210 CDD:293791 4/28 (14%)
WD40 repeat 218..268 CDD:293791 6/49 (12%)
WD40 repeat 275..311 CDD:293791 8/36 (22%)
cyclophilin_WD40 485..633 CDD:238908 70/147 (48%)
PUB49NP_201554.1 RING 39..101 CDD:302633 18/84 (21%)
cyclophilin_RING 345..502 CDD:238904 71/164 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1392223at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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