DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fcp1 and Ctdspl

DIOPT Version :10

Sequence 1:NP_611934.1 Gene:Fcp1 / 37925 FlyBaseID:FBgn0035026 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001382669.1 Gene:Ctdspl / 301056 RGDID:1304841 Length:276 Species:Rattus norvegicus


Alignment Length:182 Identity:52/182 - (28%)
Similarity:78/182 - (42%) Gaps:49/182 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 ENGQTSEA---------SVPMVHTMPDLKVTQKLAQKLGHDDTRRLLADRKLVLLVDLDQTVIHT 221
            |||...:.         |.|..:.:|::.|       |.|.         |..:::|||:|::|:
  Rat    72 ENGGLQKGDQRQVIPVPSPPAKYLLPEVTV-------LDHG---------KKCVVIDLDETLVHS 120

  Fly   222 T-------NDTVPDNIKGIYHFQLYGPHSPWYHTRLRPGTAEFLERMSQLYELHICTFGARNYAH 279
            :       :..||..|.|..| |:|        ...||...|||:||.||:|..:.|.....||.
  Rat   121 SFKPISNADFIVPVEIDGTIH-QVY--------VLKRPHVDEFLQRMGQLFECVLFTASLAKYAD 176

  Fly   280 MIAQLLDPEGKFFSHRILSRDEC-FNATSKTDNLKALFPNGD--SMVCIIDD 328
            .:|.|||..|.|.:.  |.|:.| |:..:...:|..|   |.  |.|.|:|:
  Rat   177 PVADLLDRWGVFRAR--LFRESCVFHRGNYVKDLSRL---GRELSKVIIVDN 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fcp1NP_611934.1 Biotinyl_lipoyl_domains 59..142 CDD:448245
FCP1_euk 202..348 CDD:131304 43/137 (31%)
PRK08581 373..>530 CDD:236304
BRCT_CTDP1 578..674 CDD:349361
CtdsplNP_001382669.1 HIF-SF_euk 106..265 CDD:274055 43/132 (33%)
Blue background indicates that the domain is not in the aligned region.

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