DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fcp1 and scpl-4

DIOPT Version :9

Sequence 1:NP_001286846.1 Gene:Fcp1 / 37925 FlyBaseID:FBgn0035026 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_505722.1 Gene:scpl-4 / 179481 WormBaseID:WBGene00011897 Length:452 Species:Caenorhabditis elegans


Alignment Length:462 Identity:85/462 - (18%)
Similarity:151/462 - (32%) Gaps:127/462 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 NGKTNAEDIVVIDDSS---------SGSPDAEKAASDGEDVVVIDDNSKESTKAEV-------PP 497
            ||:|....||.|:..:         :.:.:|....|:.|:...::....||.|.|.       ||
 Worm    43 NGRTRFAPIVPINHGNVFASIKLPINETQEAIAFKSEVEEAPKVEKLEVESPKIEAEKVLSSPPP 107

  Fly   498 TPAEKNEVV---------------ASSTTSPDEKRPSADADVATTSKTPSLRAPLEGQKQIEIED 547
            .||..:..:               |:|.:|......|.::|.....:..:.|..:|...:|    
 Worm   108 APAPTSSAIDELNSLKDSLEKLESAASKSSSSSGGSSDNSDPGNAEEIEARRKRMERNTRI---- 168

  Fly   548 PDDYLLYLEVILRNIHKRFYSIYDETTEIPDLKVIVPKIRSEVLRGKNLVFSGLVPTQMKL---- 608
             ..|:|:...|:..|...||....:..|..:       :.|:...|..|.....:....||    
 Worm   169 -GAYVLFGGSIIGFISFCFYYGRAQRDEFGN-------VISDEFSGSFLAPFYRIANSFKLWRDY 225

  Fly   609 --EQSRAYFIAKSLGA---EVKPNIDKEITHLVAVNAGTYKVN-AAKKEPA----IKVVNANWLW 663
              |.:|...:...|.|   :.|..|..|:.:::.....|||.. ...|.||    :.|:.     
 Worm   226 VVEPAREQLLPDPLPAPYLQPKYTIVIELKNILVHPEWTYKTGYRFLKRPALDYFLDVIG----- 285

  Fly   664 TCAERWEHVEEKLFPLDRKVRNKGRQPPAHCHSPEHVVNYSERS-----EISPSSSKQQEEQSGN 723
                 :.:.|                          ||.||..|     .:..|...:|......
 Worm   286 -----YPNFE--------------------------VVIYSSESMMTAAPVVDSFDPKQRIMYKL 319

  Fly   724 FRETLNPLLVFTNADIESMNKDYETFFESDSSSDEGPVNFENPPMDKKLLK----RKREDDNSNR 784
            ||:....:......|:..:|:|.......|..:..|.:|.||      :|:    :...||.|  
 Worm   320 FRDCTKYMNGHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPEN------MLRVPEWKGNMDDTS-- 376

  Fly   785 AHDFFTRSDDIMIGAPNLVE-VDISSNEEADDNNEKEDDDDEMPSAKFRRGEDLPSDLELGSESN 848
                       ::....|:: :.:|..|:.....:.....|: |:.:|||.....|.    .|..
 Worm   377 -----------LVDLAELLKTIHLSDAEDVRPMLQYYSQYDD-PAKEFRRRAVYLSQ----QEEQ 425

  Fly   849 SEKEPED 855
            .:::|:|
 Worm   426 KKQQPDD 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fcp1NP_001286846.1 Biotinyl_lipoyl_domains 59..142 CDD:299706
FCP1_euk 202..348 CDD:131304
COG5275 481..>658 CDD:227600 42/212 (20%)
BRCT 587..665 CDD:278934 19/91 (21%)
scpl-4NP_505722.1 NIF 248..396 CDD:281081 34/202 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.