DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brca2 and BRCA2B

DIOPT Version :10

Sequence 1:NP_611925.2 Gene:Brca2 / 37916 FlyBaseID:FBgn0050169 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_195783.3 Gene:BRCA2B / 831710 AraportID:AT5G01630 Length:1155 Species:Arabidopsis thaliana


Alignment Length:397 Identity:96/397 - (24%)
Similarity:157/397 - (39%) Gaps:91/397 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   577 FRTASNKAIPISEKMKIKTAEFMAEFQSKETIQQNDYLVHQPNDKPTSVGLD---TALKRSIESS 638
            |||...|::.:.|....|....:||..:...:|..:..:.|.....|:..:.   |||.:::...
plant    70 FRTGLGKSVVLKESSIAKAKSILAENVAYSDLQNTNCSIPQTRQVDTAETMPMFRTALGKTVPLK 134

  Fly   639 EEMRSKASKL----VVVDTTMREPHQPTLDPVCRDLNESQFFG-----FRTASNKAIEITEAMEK 694
            |...:|...:    :::|:          |.|   |.....||     |:|||||.:.::.|   
plant   135 ESSIAKPLSILGSDMIIDS----------DNV---LPRESGFGVPNSLFQTASNKKVNVSSA--- 183

  Fly   695 RGAMFLAQSKA-----TDQLNGWQPSDFPDVLPTSPNNEIHSIN----VENNKAVNTKTVSET-- 748
                .||::||     .|.|||     |..|..:|.:.:.|..:    .|...|...|..|.|  
plant   184 ----GLARAKALLGLEEDDLNG-----FNHVNQSSSSLQQHGWSGLKTHEEFDATVVKHHSGTPG 239

  Fly   749 EFFGFRTASNKGIVISENTKIKVAQFMSEFQAADASTDSNQPTVISEESRNI--D---AKFVDEA 808
            ::..:.:.....|:   |..:||..  ::||.|...:.|.....: :.:||:  |   ..|.|:.
plant   240 QYENYVSGKRSEIL---NPSLKVPP--TKFQTAGGKSLSVSAEAL-KRARNLLGDPELGSFFDDV 298

  Fly   809 AAEDSANKPTFCNVQSLKNTSDIEHFKHDFFVEHSAKEEHPLCSQPLVRTPRRSQEIHSSLSQLA 873
            |..|.     |...|..:..|||..........:.|.||             ::...|:|.|.: 
plant   299 AGGDQ-----FFTPQKDERLSDIAINNGSVNTGYIAHEE-------------KTSNKHTSNSFV- 344

  Fly   874 GKSPLDQATK--KSVIARRNLLSLKRKRKIILSTETS---TSCALPTMERFAPKPSSTSTPLA-D 932
              |||..::|  :||    ||.:|.....:|...:|:   |:||| .:.:.|....|.:.||| |
plant   345 --SPLHSSSKQFRSV----NLENLASGGNLIKKFDTAVDETNCAL-NISKPATHGLSNNRPLASD 402

  Fly   933 RDLNRSK 939
            ..:|.||
plant   403 MAVNNSK 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brca2NP_611925.2 None
BRCA2BNP_195783.3 BRCA2 69..94 CDD:459881 6/23 (26%)
BRCA2 166..193 CDD:459881 11/33 (33%)
BRCA2 260..288 CDD:459881 6/30 (20%)
BRCA-2_helical 440..624 CDD:462700
BRCA-2_OB1 628..752 CDD:462678
BRCA2DBD_OB2 759..995 CDD:239940
Blue background indicates that the domain is not in the aligned region.

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