Protein Alignment CG4612 and Pabpc5

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_444344.1
• Gene: Pabpc5 / 93728
• MGIID: 2136401
• Length: 381
• Species: Mus musculus
• Alignment Length: 215
• Identity: 91/215 - (42%)
• Similarity: 131/215 - (60%)
• Gaps: 20/215 - (9%)

  Fly   108 SSPDS-------GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEA 165
            |.||.       |.|:||||:::|||:|::..||.|||||:|.|..|::| |:||.:|||||..|
Mouse    93 SQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAA 156

  Fly   166 ARAAIEKVNGMLCNNQKVHVVKF-IPRRD----REQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225
            |..||..:||:..||::|:|.:| .|...    |.:|:|| |.|::|||..::..::.|.::|..
Mouse   157 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERAT-FTNVFVKNFGDDIDDEKLNKLFSE 220

  Fly   226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
            ||...|.|::.|..|:|:.||||.||..::|..||:.||||.: |.|.|.|.||..|.||..|:.
Mouse   221 YGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSI-DGKVLCVGRAQKKIERLAELR 284

  Fly   291 R-----KLEERKRQKAGQIF 305
            |     ||:|:.|.....|:
Mouse   285 RRFERLKLKEKNRPSGVPIY 304

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	37/69 (54%)
		RRM3_I_PABPs	202..282	CDD:240826	33/79 (42%)
Pabpc5	NP_444344.1	RRM1_I_PABPs	21..97	CDD:240824	2/3 (67%)
		ELAV_HUD_SF	28..270	CDD:273741	78/179 (44%)
		RRM2_I_PABPs	103..178	CDD:240825	39/75 (52%)
		RRM3_I_PABPs	197..276	CDD:240826	33/79 (42%)
		RRM_SF	300..376	CDD:302621	1/5 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG52254
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.120