Protein Alignment CG4612 and PAB1

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_011092.1
• Gene: PAB1 / 856912
• SGDID: S000000967
• Length: 577
• Species: Saccharomyces cerevisiae
• Alignment Length: 192
• Identity: 87/192 - (45%)
• Similarity: 127/192 - (66%)
• Gaps: 4/192 - (2%)

  Fly   112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGM 176
            ||.|:||||...|||||:||||||||:||:..:|.||:|.|:|:|||||:.|.||:.||:.:|||
Yeast   125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM 189

  Fly   177 LCNNQKVHVVKFIPRRDRE---QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDE 238
            |.|.|:::|...:.|::|:   :|...|:.||||||::.|.|::..:|:|..:|.|.|..|..|.
Yeast   190 LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254

  Fly   239 EGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQK 300
            :|:.:.||||.||..:.|:.||..|:..:|...| |||.||..|.||...:.::.|..:.:|
Yeast   255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEK-LYVGRAQKKNERMHVLKKQYEAYRLEK 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	42/69 (61%)
		RRM3_I_PABPs	202..282	CDD:240826	33/79 (42%)
PAB1	NP_011092.1	PABP-1234	38..559	CDD:130689	87/192 (45%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C157343873
Domainoid	1	1.000	101	1.000	Domainoid score	I1542
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.840