Protein Alignment CG4612 and PRP24

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_013995.1
• Gene: PRP24 / 855310
• SGDID: S000004881
• Length: 444
• Species: Saccharomyces cerevisiae
• Alignment Length: 302
• Identity: 61/302 - (20%)
• Similarity: 105/302 - (34%)
• Gaps: 104/302 - (34%)

  Fly    93 GGALASGSTGGSGGNS---SPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD------- 147
            |...|:|.|......:   :.:...:.:|||.:|.:...||..|...|.|::.:||..
Yeast    18 GSPAAAGLTSKKANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRF 82

  Fly   148 -------EDG------------------------------------------------------- 150
                   .||
Yeast    83 ARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSI 147

  Fly   151 --------NSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHF----- 202
                    .||.:.::...|:|.||..:||:||:     |:.....:.:.....||:...
Yeast   148 RLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL-----KIEGYTLVTKVSNPLEKSKRTDSATL 207

  Fly   203 --KNLYVKNLSEEFTEQH-LREMFEPYGRITSHKLMLDEEGRSRRF----GFVAYENPQSALAAV 260
              :.:.::|||.|..::: |||.||.:|.|  .|:.:....:...|    .|:.:||..||..|
Yeast   208 EGREIMIRNLSTELLDENLLRESFEGFGSI--EKINIPAGQKEHSFNNCCAFMVFENKDSAERA- 269

  Fly   261 IGLHGKQLGDNKFLYVARALSK--AERQQEINRKLEERKRQK 300
            :.::...|| |:.:.|:.|..|  .|| .|:.|.|..|..::
Yeast   270 LQMNRSLLG-NREISVSLADKKPFLER-NEVKRLLASRNSKE 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	24/146 (16%)
		RRM3_I_PABPs	202..282	CDD:240826	24/91 (26%)
PRP24	NP_013995.1	RRM1_Prp24	41..113	CDD:409737	13/71 (18%)
		RRM2_Prp24	117..195	CDD:409738	11/82 (13%)
		RRM3_Prp24	210..286	CDD:409739	23/79 (29%)
		RRM4_Prp24	312..386	CDD:409740
		Lsm_interact	425..443	CDD:398843

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0.861654	Normalized mean entropy	S4474
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.860