Protein Alignment CG4612 and PAB8

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001185184.1
• Gene: PAB8 / 841399
• AraportID: AT1G49760
• Length: 671
• Species: Arabidopsis thaliana
• Alignment Length: 323
• Identity: 115/323 - (35%)
• Similarity: 165/323 - (51%)
• Gaps: 50/323 - (15%)

  Fly    27 LAAAHHQQQLHHHAAAAGHLSHVGGGHAASNHLAAAAVLGRHGHNSLGSGH---TSTSSH----- 83
            :|...||.|..:...|....:......||:...||||...:.|..||..|.   |.|.|.
plant     1 MAQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAF 65

  Fly    84 ---SANVGVGVGGGALASGSTG-GSGGNSSPDS-------------------------------- 112
               ...|.|.|........|.| |....::|..
plant    66 TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKS 130

  Fly   113 --GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
              |.|:||||::|||:||:::|||.||.||:|.||.|..|.|:|||||.:|::|||:.||:|:||
plant   131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195

  Fly   176 MLCNNQKVHVVKFIPR--RDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDE 238
            ||.|:::|:|..|:.:  ||...|| ..|.|:|||||||..:::.|.::|..:|..||..:|.|.
plant   196 MLLNDKQVYVGPFVHKLQRDPSGEK-VKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG 259

  Fly   239 EGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQKA 301
            ||:|:.||||.:||...|..||..|:||.. |:|..:|.:|..|:||:.|:.:|.|:..::.|
plant   260 EGKSKGFGFVNFENSDDAARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAA 321

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	41/69 (59%)
		RRM3_I_PABPs	202..282	CDD:240826	35/79 (44%)
PAB8	NP_001185184.1	PABP-1234	46..646	CDD:130689	103/278 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	103	1.000	Domainoid score	I2252
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.920