DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG4612 and PAB1

DIOPT Version :9

Sequence 1:	NP_001246493.1	Gene:	CG4612 / 37914	FlyBaseID:	FBgn0035016	Length:	307	Species:	Drosophila melanogaster
Sequence 2:	NP_174676.2	Gene:	PAB1 / 840313	AraportID:	AT1G34140	Length:	407	Species:	Arabidopsis thaliana

Alignment Length:	191	Identity:	81/191 - (42%)
Similarity:	116/191 - (60%)	Gaps:	3/191 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly   107 NSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 171
            |.....|.:::|||:.|||||.:.|.||.||.:|:|.||:|..|.|:|||||.|.|:.:...|..
plant    25 NRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89

  Fly   172 KVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLML 236
            ..||.|..||.:||..|:.|  .:.:|:..|.|:|||||.|..|:..|:.:|..:|.|||..:|.
plant    90 FHNGTLIRNQHIHVCPFVSR--GQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMK 152

  Fly   237 DEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERK 297
            |.||:|||||||.:|..::|:.|:..::|..: |.|.|:|.||..|..|.:::..|.|..|
plant   153 DGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVV-DEKELHVGRAQRKTNRTEDLKAKFELEK 212

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	33/69 (48%)
CG4612	NP_001246493.1	RRM3_I_PABPs	202..282	CDD:240826	36/79 (46%)
PAB1	NP_174676.2	RRM_SF	<1..23	CDD:302621
		RRM2_I_PABPs	29..105	CDD:240825	36/75 (48%)
		ELAV_HUD_SF	30..296	CDD:273741	80/186 (43%)
		RRM3_I_PABPs	118..197	CDD:240826	36/79 (46%)
		RRM4_I_PABPs	222..299	CDD:240827
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	4.020