DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4612 and AT5G55550

DIOPT Version :9

Sequence 1:	NP_001246493.1	Gene:	CG4612 / 37914	FlyBaseID:	FBgn0035016	Length:	307	Species:	Drosophila melanogaster
Sequence 2:	NP_001331843.1	Gene:	AT5G55550 / 835649	AraportID:	AT5G55550	Length:	507	Species:	Arabidopsis thaliana

Alignment Length:	250	Identity:	55/250 - (22%)
Similarity:	92/250 - (36%)	Gaps:	84/250 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly   111 DSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHF-DSEEAARAAIEK- 172
            |.||::|..:....|.:.:.|.||.:|:::...:.:|. .|.:||:||:.| |...:.|..::|
plant     4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKH 68

  Fly   173 -VNGML--------------------------------------CNNQ----KVHVVKFIPRRDR 194
             ::|..                                      |.:|    :|...|.:||.|:
plant    69 IIDGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQ 133

  Fly   195 EQEK----ATHF-----------KNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE-GRSR 243
            :..|    ..|.           |.::|..|....||:..:..|:.:|.|....:|.|.. .|.|
plant   134 QVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPR 198

  Fly   244 RFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKR 298
            .|||:.:::..:                    |.|.|.|.  ..|:|.||.|.||
plant   199 GFGFITFDSDDA--------------------VDRVLHKT--FHELNGKLVEVKR 231

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	20/115 (17%)
CG4612	NP_001246493.1	RRM3_I_PABPs	202..282	CDD:240826	18/91 (20%)
AT5G55550	NP_001331843.1	None

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910