Protein Alignment CG4612 and LIF2

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001031566.1
• Gene: LIF2 / 827998
• AraportID: AT4G00830
• Length: 495
• Species: Arabidopsis thaliana
• Alignment Length: 266
• Identity: 59/266 - (22%)
• Similarity: 99/266 - (37%)
• Gaps: 90/266 - (33%)

  Fly   110 PDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDED-GNSRGYGFVHFDSEEAARAAIEKV 173
            |...:::|..|.|.:..:.:.|.....|.|....:.||.| |:|:||.||.|.:::.|:.|||::
plant   113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177

  Fly   174 ------------------NGMLCNN---------------------QKVHVVK------------ 187
                              |.:...|                     :.:.::|
plant   178 HSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFA 242

  Fly   188 FI---------------------------------PRRDREQE-KATHFKNLYVKNLSEEFTEQH 218
            |:                                 |:...|.. .|...|.|||||:.|..:.:.
plant   243 FVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 307

  Fly   219 LREMFEPYGRITSHKLMLDE-EGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSK 282
            |:|:|:.:|.:|  |::... :|..|.||||.|....|||.||......:: :.:.|.|..|..:
plant   308 LKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEV-NGQPLEVVLAKPQ 369

  Fly   283 AERQQE 288
            |||:.:
plant   370 AERKHD 375

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	22/109 (20%)
		RRM3_I_PABPs	202..282	CDD:240826	28/80 (35%)
LIF2	NP_001031566.1	hnRNP-R-Q	112..>430	CDD:273732	59/266 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910