Protein Alignment CG4612 and PAB6

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_188259.1
• Gene: PAB6 / 820885
• AraportID: AT3G16380
• Length: 537
• Species: Arabidopsis thaliana
• Alignment Length: 288
• Identity: 94/288 - (32%)
• Similarity: 140/288 - (48%)
• Gaps: 62/288 - (21%)

  Fly    65 LGRHGHNS-LGSGHTSTSS-----------HSANVGV--------GVGGGALA----------SG 99
            ||.|.|:| .||.:....|           .|.||.|        .|.|.::.          |.
plant    11 LGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSA 75

  Fly   100 STGGSGGNSSPDSGK-----------------------IYIKNLERSIDNKAVYDTFSVFGNILN 141
            |...:..|.|...||                       :|:|||:.||.:..:...|..||:||:
plant    76 SNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILS 140

  Fly   142 CNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDRE----QEKATHF 202
            |.|. :|:|.|:|:|||.||:|::|.:|...::|.:...:|:.|.|||.:.:|.    .:.:|
plant   141 CKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDST-- 202

  Fly   203 KNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQ 267
             |:|||||.|..|:..|..:|..||.::|..:|.|..||||.||||.:.||::|..|:..|.|.|
plant   203 -NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQ 266

  Fly   268 LGDNKFLYVARALSKAERQQEINRKLEE 295
            ||..| |:|.:||.|.||::.:.:|..:
plant   267 LGSKK-LFVGKALKKDERREMLKQKFSD 293

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	27/69 (39%)
		RRM3_I_PABPs	202..282	CDD:240826	37/79 (47%)
PAB6	NP_188259.1	PABP-1234	22..477	CDD:130689	88/277 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920