DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and UBA1A

DIOPT Version :9

Sequence 1:NP_001246493.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_850021.1 Gene:UBA1A / 816744 AraportID:AT2G22090 Length:347 Species:Arabidopsis thaliana


Alignment Length:164 Identity:36/164 - (21%)
Similarity:70/164 - (42%) Gaps:25/164 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 KNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFV-------------HFDSEEAARA- 168
            |.|::|...|.|....:.|......|..:.:..:|..|...             .||.||.... 
plant     3 KTLDKSKKRKLVKSKSTNFDKKQKINKQQQQPESSTPYSSSSSSSDSSDSESDNEFDPEELRELL 67

  Fly   169 ---AIEKVNGMLCNNQKVHVVKF---IPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 227
               :.:::..::|:..::....:   :...||:   .|| :.::|..|..|.|.:.|..:||.||
plant    68 QPYSKDQLVDLVCSASRIGSSIYSAVVEAADRD---VTH-RKIFVYGLPWETTRETLVGVFEGYG 128

  Fly   228 RITSHKLMLDE-EGRSRRFGFVAYENPQSALAAV 260
            .|....:::|: .|:::.||||.::..:.|..|:
plant   129 EIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_001246493.1 RRM2_I_PABPs 115..185 CDD:240825 14/83 (17%)
RRM3_I_PABPs 202..282 CDD:240826 18/60 (30%)
UBA1ANP_850021.1 RRM_SF 104..179 CDD:418427 18/59 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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