Protein Alignment CG4612 and Pabpc5

DIOPT Version :10

• Sequence 1: NP_611924.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001103836.1
• Gene: Pabpc5 / 688518
• RGDID: 1587661
• Length: 382
• Species: Rattus norvegicus
• Alignment Length: 202
• Identity: 88/202 - (43%)
• Similarity: 127/202 - (62%)
• Gaps: 15/202 - (7%)

  Fly   108 SSPDS-------GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEA 165
            |.||.       |.|:||||::||||:|::..||.|||||:|.|..|::| |:||.:|||||..|
  Rat    94 SQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAA 157

  Fly   166 ARAAIEKVNGMLCNNQKVHVVKF-IPRRD----REQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225
            |..||..:||:..||::|:|.:| .|...    |.:::|| |.|::|||..::..::.|:::|..
  Rat   158 ANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT-FTNVFVKNFGDDIDDEKLKKLFSE 221

  Fly   226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
            ||...|.|::.|..|:|:.||||.||..::|..||:.||||.: |.|.|.|.||..|.||..|:.
  Rat   222 YGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSI-DGKVLCVGRAQKKIERLAELR 285

  Fly   291 RKLEERK 297
            |:.|..|
  Rat   286 RRFERLK 292

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_611924.1	PABP-1234	115..>303	CDD:130689	84/188 (45%)
Pabpc5	NP_001103836.1	PABP-1234	22..>379	CDD:130689	88/202 (44%)