Protein Alignment CG4612 and trv

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Alignment Length: 224
• Identity: 54/224 - (24%)
• Similarity: 93/224 - (41%)
• Gaps: 50/224 - (22%)

  Fly   105 GGNSSPDSGK-------------IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGY 155
            ||....||.:             |::.:|...|:.:.:.:.|:.||.|.:|.|.:| :...|:||
  Fly   291 GGQDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGY 355

  Fly   156 GFVHFDSEEAARAAIEKVNGMLCNNQKVHV--VKFIPRRDREQEKATHFKNLY------------ 206
            |||.|..:..|.:||..:||....::.:..  ....|...:|..|...|..:|
  Fly   356 GFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYV 420

  Fly   207 --VKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLH----- 264
              |.:.....:|:.|::.|.|||.|...::..|     :.:.||.:...::|..|::|:|
  Fly   421 GGVNSALTALSEEVLQKTFAPYGAIQEIRVFKD-----KGYAFVRFSTKEAATHAIVGVHNTEIN 480

  Fly   265 --------GKQLGD--NKFLYVARALSKA 283
                    ||:.||  |......:||:.|
  Fly   481 AQPVKCSWGKESGDPNNAQTIATQALNSA 509

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	22/70 (31%)
		RRM3_I_PABPs	202..282	CDD:240826	24/108 (22%)
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:240799	22/73 (30%)
		RRM3_TIA1_like	416..491	CDD:240800	16/79 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910