DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and Elavl4

DIOPT Version :9

Sequence 1:NP_001246493.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:XP_006238653.1 Gene:Elavl4 / 432358 RGDID:1560027 Length:393 Species:Rattus norvegicus


Alignment Length:233 Identity:57/233 - (24%)
Similarity:109/233 - (46%) Gaps:22/233 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 VGGGALASGSTGGSGGN----------SSPDSGK--IYIKNLERSIDNKAVYDTFSVFGNILNCN 143
            |..|..::.|.|.|..|          ::.|..|  :.:..|.:::..:.....|...|.|.:|.
  Rat    25 VSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 89

  Fly   144 VAKDE-DGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYV 207
            :.:|: .|.|.|||||::...:.|..||..:||:....:.:.|     ...|....:....||||
  Rat    90 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV-----SYARPSSASIRDANLYV 149

  Fly   208 KNLSEEFTEQHLREMFEPYGRITSHKLMLDE-EGRSRRFGFVAYENPQSALAAVIGLHG-KQLGD 270
            ..|.:..|::.|.::|..||||.:.::::|: .|.||..||:.::....|..|:.||:| |..|.
  Rat   150 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 214

  Fly   271 NKFLYVARALSKAERQQE--INRKLEERKRQKAGQIFY 306
            .:.:.|..|.:.:::..:  :::..:...|:..|.:.:
  Rat   215 TEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_001246493.1 RRM2_I_PABPs 115..185 CDD:240825 18/70 (26%)
RRM3_I_PABPs 202..282 CDD:240826 27/81 (33%)
Elavl4XP_006238653.1 ELAV_HUD_SF 56..392 CDD:273741 50/202 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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