DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and crp79

DIOPT Version :10

Sequence 1:NP_611924.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001018242.1 Gene:crp79 / 3361521 PomBaseID:SPAC1610.03C Length:710 Species:Schizosaccharomyces pombe


Alignment Length:201 Identity:54/201 - (26%)
Similarity:94/201 - (46%) Gaps:20/201 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NSSPDSGKIYIKNLERSI--DNKAVYDTFSVFGNILNCNVA-KDEDGNSRGYGFVHFDSEEAARA 168
            ||..|...:|:|||:.::  ....:.|.||.||:||:..:| ....|.|:|||||.|...|||..
pombe   376 NSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVR 440

  Fly   169 AIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
            |.:.:|||:...:::.|.....:.||.:.....|.|   |..||:..:|..:.:|....|.::..
pombe   441 AKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFAN---KPTSEQTAQQDNKALFVKPERSSTVT 502

  Fly   234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKR 298
            :....|..:.:..    |||.:..:.|...:..:.|:||        ..::..:.:|.|.|  .:
pombe   503 IRKPIESSTNKIS----ENPTTLSSKVENKNEPKTGENK--------EPSQTNEYVNCKQE--NK 553

  Fly   299 QKAGQI 304
            :.:||:
pombe   554 ELSGQL 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_611924.1 PABP-1234 115..>303 CDD:130689 49/190 (26%)
crp79NP_001018242.1 RRM1_Crp79 16..103 CDD:410198
RRM2_Crp79_Mug28 205..278 CDD:410200
RRM3_Crp79_Mug28 379..470 CDD:410201 31/90 (34%)
Blue background indicates that the domain is not in the aligned region.

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