Protein Alignment CG4612 and syncrip

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_999861.1
• Gene: syncrip / 326663
• ZFINID: ZDB-GENE-030131-4862
• Length: 630
• Species: Danio rerio
• Alignment Length: 308
• Identity: 57/308 - (18%)
• Similarity: 103/308 - (33%)
• Gaps: 110/308 - (35%)

  Fly    92 GGGALASGSTGGSGGNSSPDSG-KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRG 154
            ||....|..||     :.|..| :|::..:.|.:....:...|...|.|.:..:..|. .|.:||
Zfish   145 GGPPPESVYTG-----AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRG 204

  Fly   155 YGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFI------------------------------ 189
            |.|:.|.::|||:.|::     ||||.::...|.|
Zfish   205 YAFLTFCTKEAAQEAVK-----LCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFS 264

  Fly   190 ------------------------------------------------------------PRRDR 194
                                                                        |..|.
Zfish   265 KVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDP 329

  Fly   195 EQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAA 259
            :.|.....|.|:|:||:...||:.|.:.|..:|.:...|.:.|       :.||.:.:...|:.|
Zfish   330 DPEVMAKVKVLFVRNLANSVTEEILEKAFGQFGNLERVKKLKD-------YAFVHFNDRDGAVKA 387

  Fly   260 VIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQKAGQIFYY 307
            :..::||:| :.:.:.:..|....::::|...:.:..|.|.....:||
Zfish   388 LTEMNGKEL-EGEHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYY 434

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	20/70 (29%)
		RRM3_I_PABPs	202..282	CDD:240826	20/79 (25%)
syncrip	NP_999861.1	hnRNP-R-Q	103..622	CDD:273732	57/308 (19%)
		RRM1_hnRNPQ	161..239	CDD:240927	23/82 (28%)
		RRM2_hnRNPQ	241..325	CDD:240933	0/83 (0%)
		RRM3_hnRNPQ	337..408	CDD:240939	20/78 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910