Protein Alignment CG4612 and fne

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001096965.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 356
• Species: Drosophila melanogaster
• Alignment Length: 190
• Identity: 51/190 - (26%)
• Similarity: 87/190 - (45%)
• Gaps: 26/190 - (13%)

  Fly    98 SGSTGGSGGNSSPDSGKIYIKN-LERSIDNKAVYDTFSVFGNILNCNVAKD-------------- 147
            :||..||...|:.:|....|.| |.:::..:.:...||..|.:.:|.:.:|
  Fly    10 NGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTA 74

  Fly   148 -----EDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYV 207
                 :.|.|.|||||::...|.|..|:..:||:...| ||..|.:.    |...::....||||
  Fly    75 LNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQN-KVIKVSYA----RPSSESIKGANLYV 134

  Fly   208 KNLSEEFTEQHLREMFEPYGRITSHKLMLDE-EGRSRRFGFVAYENPQSALAAVIGLHGK 266
            ..|.:..::..|..||..:|:|.:.:::.|. .|.|:..||:.::....|..|:..|:||
  Fly   135 SGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	23/89 (26%)
		RRM3_I_PABPs	202..282	CDD:240826	20/66 (30%)
fne	NP_001096965.1	ELAV_HUD_SF	23..354	CDD:273741	46/177 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439615
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840