DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and Pabpc1l2a

DIOPT Version :10

Sequence 1:NP_611924.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001388053.1 Gene:Pabpc1l2a / 302405 RGDID:1566367 Length:229 Species:Rattus norvegicus


Alignment Length:86 Identity:45/86 - (52%)
Similarity:63/86 - (73%) Gaps:1/86 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGML 177
            |.::||||.::|||||:|:.||.|||||:|.||.||.| .:|||||||..:|:|..||:.:|||.
  Rat   119 GNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMF 182

  Fly   178 CNNQKVHVVKFIPRRDREQEK 198
            .|.:|:.|.:|...::||.|:
  Rat   183 LNYRKIFVGRFKSHKEREAER 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_611924.1 PABP-1234 115..>303 CDD:130689 44/84 (52%)
Pabpc1l2aNP_001388053.1 PABP-1234 31..>201 CDD:130689 43/82 (52%)

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