DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and Sf3b4

DIOPT Version :10

Sequence 1:NP_611924.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001011951.1 Gene:Sf3b4 / 295270 RGDID:1309667 Length:424 Species:Rattus norvegicus


Alignment Length:191 Identity:60/191 - (31%)
Similarity:86/191 - (45%) Gaps:40/191 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 AAGHLS--------HVGG-----------------GHAASNHLAAAAVLGRHGHNSLGSGHTS-T 80
            |||.:|        :|||                 |...:.|:....|.|:|    .|.|... .
  Rat     2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQH----QGYGFVEFL 62

  Fly    81 SSHSANVGVGVGGGALASGS----TGGSGGNSSPDSG-KIYIKNLERSIDNKAVYDTFSVFGNIL 140
            |...|:..:.:.......|.    ...|..|.:.|.| .|:|.||:..||.|.:|||||.||.||
  Rat    63 SEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

  Fly   141 NC-NVAKDED-GNSRGYGFVHFDSEEAARAAIEKVNGM-LCNNQKVHVVKFIPRRDREQEK 198
            .. .:.:|.| |||:||.|::|.|.:|:.||||.:||. |||  :...|.:..::|.:.|:
  Rat   128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN--RPITVSYAFKKDSKGER 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_611924.1 PABP-1234 115..>303 CDD:130689 39/87 (45%)
Sf3b4NP_001011951.1 RRM1_SF3B4 15..88 CDD:409771 13/76 (17%)
RRM2_SF3B4 99..181 CDD:409772 38/83 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 207..424
Blue background indicates that the domain is not in the aligned region.

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