Sequence 1: | NP_001246493.1 | Gene: | CG4612 / 37914 | FlyBaseID: | FBgn0035016 | Length: | 307 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001099899.1 | Gene: | Pabpc4l / 295010 | RGDID: | 1559517 | Length: | 370 | Species: | Rattus norvegicus |
Alignment Length: | 247 | Identity: | 89/247 - (36%) |
---|---|---|---|
Similarity: | 143/247 - (57%) | Gaps: | 24/247 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 70 HNSLGSGHTSTSSHSANVGVGVGGGALASGSTGGSGGNS-------------SPDSGKIYIKNLE 121
Fly 122 RSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVV 186
Fly 187 KFIPRRDRE---QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFV 248
Fly 249 AYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQK 300 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG4612 | NP_001246493.1 | RRM2_I_PABPs | 115..185 | CDD:240825 | 34/69 (49%) |
RRM3_I_PABPs | 202..282 | CDD:240826 | 28/79 (35%) | ||
Pabpc4l | NP_001099899.1 | ELAV_HUD_SF | 11..262 | CDD:273741 | 79/221 (36%) |
RRM1_I_PABPs | 11..89 | CDD:240824 | 11/46 (24%) | ||
RRM2_I_PABPs | 96..171 | CDD:240825 | 36/75 (48%) | ||
RRM3_I_PABPs | 189..268 | CDD:240826 | 28/79 (35%) | ||
RRM_SF | 293..369 | CDD:302621 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG52254 | |
OrthoDB | 1 | 1.010 | - | - | D1027234at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000294 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24012 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 5.120 |