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Protein Alignment CG4612 and Pabpc2
DIOPT Version :9
Sequence 1: | NP_001246493.1 |
Gene: | CG4612 / 37914 |
FlyBaseID: | FBgn0035016 |
Length: | 307 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001099621.1 |
Gene: | Pabpc2 / 291615 |
RGDID: | 1310759 |
Length: | 630 |
Species: | Rattus norvegicus |
Alignment Length: | 186 |
Identity: | 90/186 - (48%) |
Similarity: | 130/186 - (69%) |
Gaps: | 5/186 - (2%) |
- Green bases have known domain annotations that are detailed below.
Fly 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGML 177
|.::||||.::|||||:|||||.|||||:|.|..||:| |:|:|||||::||||..||||:||||
Rat 99 GNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGML 162
Fly 178 CNNQKVHVVKFIPRRDREQEKAT---HFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE 239
.|::||.|.:|..|::||.|..| .|.|:|:||..:...::.|..:|..:|::.|.|:|.||.
Rat 163 LNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG 227
Fly 240 GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 295
|:|:.||||::|..:.|..||..::||:| :.|.:||..|..|.:|..|:.||.|:
Rat 228 GKSKGFGFVSFERHEDAQKAVDEMNGKEL-NGKHIYVGPAQKKVDRHIELKRKFEQ 282
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1027234at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000294 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_100425 |
Panther |
1 |
1.100 |
- |
- |
O |
PTHR24012 |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
6 | 5.920 |
|
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