DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4612 and PABPC1

DIOPT Version :10

Sequence 1:NP_611924.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_002559.2 Gene:PABPC1 / 26986 HGNCID:8554 Length:636 Species:Homo sapiens


Alignment Length:191 Identity:97/191 - (50%)
Similarity:138/191 - (72%) Gaps:5/191 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGML 177
            |.|:||||::||||||:|||||.|||||:|.|..||:| |:|||||||:::|||..||||:||||
Human    99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 162

  Fly   178 CNNQKVHVVKFIPRRDREQE---KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE 239
            .|::||.|.:|..|::||.|   :|..|.|:|:||..|:..::.|:::|..:|...|.|:|.||.
Human   163 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227

  Fly   240 GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQK 300
            |:|:.||||::|..:.|..||..::||:| :.|.:||.||..|.|||.|:.||.|:.|:.:
Human   228 GKSKGFGFVSFERHEDAQKAVDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4612NP_611924.1 PABP-1234 115..>303 CDD:130689 96/189 (51%)
PABPC1NP_002559.2 PABP-1234 11..615 CDD:130689 97/191 (51%)
CSDE1-binding 166..289 50/123 (41%)
(Microbial infection) Binding to HRSV M2-1 protein. /evidence=ECO:0000269|PubMed:31649314 541..636
Blue background indicates that the domain is not in the aligned region.

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