Protein Alignment CG4612 and sqd-1

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 201
• Identity: 49/201 - (24%)
• Similarity: 93/201 - (46%)
• Gaps: 23/201 - (11%)

  Fly    91 VGGGALASGSTGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRG 154
            :.|.|..:....|.....:.|. ||::..:...::|:.:...|:.:|.:....|..|. :|.|||
 Worm     8 INGNASETIKENGHSTKGNEDK-KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRG 71

  Fly   155 YGFVHFDSEEAARAAI----EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFT 215
            :.||.|.:.|..:.|:    :.:.|        ..|:..|.:.||.:|      ::|..|..:::
 Worm    72 FAFVEFTTGEGCKLALAAREQTIKG--------KSVEVKPAKSRENKK------VFVGGLPSDYS 122

  Fly   216 EQHLREMFEPYGRITSHKLMLDEEGRSRR-FGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARA 279
            ||.||..||.:|::...:...|::.::|| |.|:.:|..:||..|  ....||....:...|.:|
 Worm   123 EQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA--SSQTKQTFGTRECDVKKA 185

  Fly   280 LSKAER 285
            :.:.:|
 Worm   186 VPQGKR 191

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	16/74 (22%)
		RRM3_I_PABPs	202..282	CDD:240826	22/80 (28%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	18/81 (22%)
		RRM_SF	111..185	CDD:418427	22/81 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910