Protein Alignment CG4612 and pab-1

DIOPT Version :9

• Sequence 1: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Sequence 2: NP_001369814.1
• Gene: pab-1 / 172920
• WormBaseID: WBGene00003902
• Length: 646
• Species: Caenorhabditis elegans
• Alignment Length: 193
• Identity: 97/193 - (50%)
• Similarity: 135/193 - (69%)
• Gaps: 5/193 - (2%)

  Fly   112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGM 176
            :|.|:||||::.||||::|||||:|||||:|.||.||||.|:|||||||::||||:.||:|||||
 Worm   119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGM 183

  Fly   177 LCNNQKVHVVKFIPRRDREQ---EKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDE 238
            |...:||.|.||.||..|.:   |.|..|.|:||||..:.:.::.|.::|..:|.|||.::| ..
 Worm   184 LLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TV 247

  Fly   239 EGRSRRFGFVAYENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQK 300
            ||:|:.|||||:.||:.|..||..||...: |.:..|:|.||..|:||..|:.:|.|:.|.::
 Worm   248 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAER 310

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	48/69 (70%)
		RRM3_I_PABPs	202..282	CDD:240826	33/80 (41%)
pab-1	NP_001369814.1	PABP-1234	32..640	CDD:130689	97/193 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.920