DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Letm1 and AT5G06220

DIOPT Version :10

Sequence 1:NP_611922.1 Gene:Letm1 / 37912 FlyBaseID:FBgn0284252 Length:1013 Species:Drosophila melanogaster
Sequence 2:NP_001190239.1 Gene:AT5G06220 / 830509 AraportID:AT5G06220 Length:909 Species:Arabidopsis thaliana


Alignment Length:328 Identity:75/328 - (22%)
Similarity:129/328 - (39%) Gaps:70/328 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GRNLRTSHLAQNVY-------KRFLKSNCCACSSVNVTDEPAKEDELPRRSASTSV--------- 57
            |..:|...|.|.::       |..:|:.|.....:....:.|:..|...|:.:.|:         
plant   594 GALVRLESLLQQLHASSSSSGKEQIKAACSDLEKIRKLKKEAEFLEASFRAKAASLQEGGGDSDS 658

  Fly    58 LELSRSLGTYRRFQPHAN------YGYDYSGY-GFRHLHTSRTLLETSSSK--IDATVKKLKNQQ 113
            .|.|.....|.|.:...|      .|...||: ||        .:.|...|  .::...|...:.
plant   659 QEYSEEQSQYLRGKDPKNSINSVDQGTRDSGFWGF--------FVRTPKGKPGPESLTDKYFEKS 715

  Fly   114 KEKVE------------EIMKEVANGQAAAVRASSAATATASSEKGQNASATAGSTSATASTTS- 165
            :|.|:            |:::.........|:.|:..:...|.:..:::|:|.|.....:|... 
plant   716 RENVDNVDSNPNEIYRFELLRNELIELEKRVQGSTDESGRTSEDLPKSSSSTKGVQLVQSSKKEN 780

  Fly   166 -LAKTADKSVAKPKKPLRTRIWDELVHYYHGFRLLFIDVAICSKLLWRVLNGKTLTRRENKQLQR 229
             :.||.|:     .|...|.:|       .|.:||..|.|...:||.|.:.|..||.:|.|.|:|
plant   781 VIEKTLDQ-----LKDATTDVW-------QGTQLLAFDSAAAMELLRRSVVGDELTEKEKKALRR 833

  Fly   230 TTSDLFRLIPFSVFIIVPFMEL----LLPLFIKFFPGMLPSTFQTSTDRQEKLRQSLSVRLEVAK 290
            |.:||..::|..|.:::|...:    :|....::.||::|||:  ..:|...|||     ||..|
plant   834 TMTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTY--GAERLNLLRQ-----LEKVK 891

  Fly   291 FLQ 293
            .:|
plant   892 QMQ 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Letm1NP_611922.1 LETM1_RBD 219..450 CDD:462258 26/79 (33%)
PRK03918 <543..>916 CDD:235175
AT5G06220NP_001190239.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.