DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha4T2 and Psmb2

DIOPT Version :9

Sequence 1:NP_001286844.1 Gene:Prosalpha4T2 / 37910 FlyBaseID:FBgn0017556 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_036100.3 Gene:Psmb2 / 26445 MGIID:1347045 Length:201 Species:Mus musculus


Alignment Length:135 Identity:24/135 - (17%)
Similarity:53/135 - (39%) Gaps:37/135 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDH---------VVMTFSGLTADARILVSRA 89
            ::|::..:.:::..::.:..::        :.|.|||         :::...|...|........
Mouse     4 LIGIQGPDYVLVASDRVAASNI--------VQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI 60

  Fly    90 QMEAQSHRL--NFE-KPTTVEYITRYIAQLKQNYTQSN------GRRPFGLSCLVGGFDEDGTPH 145
            |...|.:::  .:| .||..           .|:|:.|      .|.|:.::.|:.|:||...|.
Mouse    61 QKNVQLYKMRNGYELSPTAA-----------ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPA 114

  Fly   146 LFQTD 150
            |:..|
Mouse   115 LYYMD 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T2NP_001286844.1 arc_protsome_A 5..215 CDD:163366 24/135 (18%)
Ntn_hydrolase 5..214 CDD:294319 24/135 (18%)
Psmb2NP_036100.3 proteasome_beta_type_2 1..192 CDD:239727 24/135 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.