DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T2 and Psmb1

DIOPT Version :9

Sequence 1:NP_001286844.1 Gene:Prosalpha4T2 / 37910 FlyBaseID:FBgn0017556 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus


Alignment Length:160 Identity:40/160 - (25%)
Similarity:66/160 - (41%) Gaps:13/160 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKR-SVGDLQEERMVRKICMLDDHVVMTFSGLTADA 82
            :|:.::..|. .|.||:.:...:..::..:.| |.|.....|...|...|.|..|:..||...|.
Mouse    25 VQLRFSPYAF-NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88

  Fly    83 RIL--VSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPH 145
            ..|  :..|:::...|..|  |..|    |..||.:......|....|:.:..::||.||:|...
Mouse    89 LTLTKIIEARLKMYKHSNN--KAMT----TGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGA 147

  Fly   146 LFQTDPSGIFYEWRANTTGRSS---QPVRD 172
            ::..||.|.:........|.:|   ||:.|
Mouse   148 VYSFDPVGSYQRDSFKAGGSASAMLQPLLD 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T2NP_001286844.1 arc_protsome_A 5..215 CDD:163366 40/160 (25%)
Ntn_hydrolase 5..214 CDD:294319 40/160 (25%)
Psmb1NP_035315.1 PRE1 18..240 CDD:223711 40/160 (25%)
proteasome_beta_type_1 29..240 CDD:239726 39/156 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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