DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T2 and pas-4

DIOPT Version :9

Sequence 1:NP_001286844.1 Gene:Prosalpha4T2 / 37910 FlyBaseID:FBgn0017556 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_492360.1 Gene:pas-4 / 172679 WormBaseID:WBGene00003925 Length:253 Species:Caenorhabditis elegans


Alignment Length:251 Identity:131/251 - (52%)
Similarity:180/251 - (71%) Gaps:7/251 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLD 68
            |||||:||:||||||.|||||||||::|||.:|:|..:.|||||||:|:..||::|.:|||.|:|
 Worm     3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMID 67

  Fly    69 DHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSC 133
            |||::.|:||:||||:||.||::|.||::|..|.|.||.||:||||..||.:|||.||||||:|.
 Worm    68 DHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISM 132

  Fly   134 LVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTL 198
            |:||||.||||.||:|:|||.:||:.||.|||..:|||:|:|:...|..|: |||..:|.:|::|
 Worm   133 LIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTV-DEATTLKLVVKSL 196

  Fly   199 VSVSSLNHTQMEVAVLK------YRQPLRMIDHQVLADLERTVRREIEDEAEASRR 248
            ..|.......:|:||:|      .::.|...:.:.|..:..|.|...|.|..||::
 Worm   197 AQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVETERVAAEAEEAASKK 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T2NP_001286844.1 arc_protsome_A 5..215 CDD:163366 121/209 (58%)
Ntn_hydrolase 5..214 CDD:294319 120/208 (58%)
pas-4NP_492360.1 PRK03996 4..234 CDD:235192 124/230 (54%)
proteasome_alpha_type_7 4..212 CDD:239724 120/208 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164108
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 297 1.000 Inparanoid score I1652
Isobase 1 0.950 - 0 Normalized mean entropy S208
OMA 1 1.010 - - QHG62217
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 1 1.000 - - FOG0002043
OrthoInspector 1 1.000 - - otm14312
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11599
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1345
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.860

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