DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T2 and pbs-4

DIOPT Version :9

Sequence 1:NP_001286844.1 Gene:Prosalpha4T2 / 37910 FlyBaseID:FBgn0017556 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_491261.1 Gene:pbs-4 / 171975 WormBaseID:WBGene00003950 Length:202 Species:Caenorhabditis elegans


Alignment Length:125 Identity:26/125 - (20%)
Similarity:54/125 - (43%) Gaps:36/125 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VMGLRTNNAIVIGVEKR----------SVGDLQEERMVRKI---CMLDDHVVMTFSGLTADARIL 85
            ::|:.|.|.:::..:|.          |..| :|.|:.:|:   |:.::..|..|...|      
 Worm     7 LVGISTENYVILAADKATFAYGAILADSEND-KEYRLGKKLTMMCIGEEGDVAQFGDWT------ 64

  Fly    86 VSRAQMEAQSHRLNFE-KPTTV-EYITRYIAQ---LKQNYTQSNGRRPFGLSCLVGGFDE 140
              :..::..|.|..:| .|:.. .::.|.||:   .:.:||         :..|:||:|:
 Worm    65 --KRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYT---------VDVLIGGYDD 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T2NP_001286844.1 arc_protsome_A 5..215 CDD:163366 26/125 (21%)
Ntn_hydrolase 5..214 CDD:294319 26/125 (21%)
pbs-4NP_491261.1 proteasome_beta_type_2 4..199 CDD:239727 26/125 (21%)
PRE1 8..199 CDD:223711 26/124 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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