DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13579 and ser-4

DIOPT Version :9

Sequence 1:NP_001261169.1 Gene:CG13579 / 37905 FlyBaseID:FBgn0035010 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_497452.1 Gene:ser-4 / 175322 WormBaseID:WBGene00004779 Length:445 Species:Caenorhabditis elegans


Alignment Length:473 Identity:101/473 - (21%)
Similarity:173/473 - (36%) Gaps:94/473 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TGSLLVAPAVKNSSCSHPRYSGHNFIAHIGIAETIE---------AVLILVLTLGVIGANCLVIF 60
            |.|....||...|:.:...:....|.||..|...||         |.::|||.|.....|..||.
 Worm    10 TASPSSQPATLLSAVARGTHLVDQFPAHAEIFSDIERPLVQTVILASVLLVLILSCFIGNLFVIL 74

  Fly    61 VINNRRYAAYIHQQPR-YLLTSLALNDLTIGLLITPFGLMPALFHCWPYGEIFCQIQALLRGALS 124
            .|...|   .:..:|: ||:.|||:.||.:|:::||.|....:...|..|.:.|.....:...:.
 Worm    75 AIIMER---DLRGRPQYYLIFSLAVADLLVGMIVTPLGAWFTVTGTWNLGVVVCDFWISVDVLVC 136

  Fly   125 QQSAVILVCMAVDRY-----MCALHPRRYYQHSSKKGCVAILSLTW----IISLTVF-GFLVLPK 179
            ..|.:.||.:|:|||     :|      |.|:.:.|....:|::.|    :|||..| |:    |
 Worm   137 TASILHLVAIALDRYWSITDIC------YVQNRTPKRITLMLAVIWFTSLLISLAPFAGW----K 191

  Fly   180 GYYFNNTGLMACEPFYSKP-SYRILSTCALYFPTTMVLMYCYGSSFHMSRFRLNDPTMPLTAAAH 243
            ...|::..|.:.....|:. ||::.||...::...:.::..|......::.|........|..  
 Worm   192 DEGFSDRVLKSHVCLISQQISYQVFSTATAFYIPLIAIICVYWKIMRAAKKRFKRERDRRTVI-- 254

  Fly   244 HPHPHPHPTAAQQLQMHQHQ--------------QHHQQAGMHSHLYHGHSHHPSHPSHPNHPNH 294
              .|.|.....::..|.:..              |.:...|..::.......|....|..:....
 Worm   255 --RPPPDAIDEKKAMMPKKSKKCPLPPAVVISDIQANGGTGGKTNSIKNPPRHNESSSSASEEER 317

  Fly   295 HGHPHHHGPPVMGHLSMAMSMGLAGMPNMTNKITKKIVPIQEKNSSGSTS--------------- 344
            .....:|.|                 .::|.:.||    |.|:|......               
 Worm   318 TMTQTNHAP-----------------GDVTTQETK----IDEENGRSKPGIVKRRRRTKESNEMK 361

  Fly   345 ------RSMAAISLGFIVMVTPWTIQEIVTACTGSKLPPFLDFLVTWTALSNSLWNPFMYWLLNS 403
                  |::|.|:..|:...||:.:..|.....|.::.|.|:.:..|....||..||.:|.:.:.
 Worm   362 RERKAWRTLAIITGTFVACWTPFFLVSIYRPICGCQISPVLEQVTLWLGYLNSALNPIIYTVFSQ 426

  Fly   404 DFRRMSRQLMPNKCFPHE 421
            |||...::::...|..|:
 Worm   427 DFRAAFKRIIKRMCLIHD 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13579NP_001261169.1 7tm_4 51..>148 CDD:304433 28/102 (27%)
ser-4NP_497452.1 7tmA_5-HT1A_invertebrates 52..432 CDD:320454 88/417 (21%)
TM helix 1 53..79 CDD:320454 9/25 (36%)
TM helix 2 87..113 CDD:320454 11/25 (44%)
TM helix 3 125..155 CDD:320454 8/29 (28%)
TM helix 4 166..188 CDD:320454 6/21 (29%)
TM helix 5 210..239 CDD:320454 5/28 (18%)
TM helix 6 361..391 CDD:320454 7/29 (24%)
TM helix 7 400..425 CDD:320454 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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