DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3494 and Lrrc57

DIOPT Version :9

Sequence 1:NP_611915.1 Gene:CG3494 / 37903 FlyBaseID:FBgn0035008 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001153082.1 Gene:Lrrc57 / 66606 MGIID:1913856 Length:281 Species:Mus musculus


Alignment Length:214 Identity:61/214 - (28%)
Similarity:101/214 - (47%) Gaps:33/214 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 QVSKAQISEVPMEVFEAAQQEL--------------------VNIVSLDGNRLLEMPKDLPLLSE 85
            ::.:|::..||.......::||                    ..:..|....|.|.|.:|..|:.
Mouse    16 RLRRARVPGVPWRSLLCTERELSRGARMGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTS 80

  Fly    86 HLTQLVLNKNQI-SFVPTNISQYSKLTNLSLSNNLLCDLPMELGGLRLLRNLDISHNRFRQLPRC 149
            :|..:.|:.|:| |..|..|.:::.|.:|||:||.|..||.||..|:.|..|.:::|..|:||..
Mouse    81 NLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPST 145

  Fly   150 IYELERLETLSAHDNQIRAIDASESGLGGMRELKRLNLGNNDIQIVPPILGKMQNLVELELWGNP 214
            ..:|..|:|||...||:.|:...   |..:|.|..::|..|.|:.:|..:|::| .:||.|..|.
Mouse   146 FGQLSALKTLSLSGNQLGALPPQ---LCCLRHLDVVDLSKNQIRSIPDTVGELQ-AIELNLNQNQ 206

  Fly   215 FRQ--------PRHQILSM 225
            ..|        ||.::|.:
Mouse   207 ISQLSVKISCCPRLKVLRL 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3494NP_611915.1 LRR <34..>231 CDD:227223 61/214 (29%)
leucine-rich repeat 38..62 CDD:275380 3/20 (15%)
leucine-rich repeat 63..86 CDD:275380 6/22 (27%)
LRR_4 85..124 CDD:289563 14/39 (36%)
leucine-rich repeat 87..109 CDD:275380 7/22 (32%)
leucine-rich repeat 110..133 CDD:275380 12/22 (55%)
leucine-rich repeat 134..155 CDD:275380 6/20 (30%)
leucine-rich repeat 156..181 CDD:275380 8/24 (33%)
leucine-rich repeat 182..204 CDD:275380 6/21 (29%)
Lrrc57NP_001153082.1 LRR <62..>211 CDD:227223 53/152 (35%)
leucine-rich repeat 82..105 CDD:275380 7/22 (32%)
leucine-rich repeat 106..128 CDD:275380 12/21 (57%)
leucine-rich repeat 129..151 CDD:275380 7/21 (33%)
leucine-rich repeat 152..174 CDD:275380 8/24 (33%)
leucine-rich repeat 175..197 CDD:275380 7/22 (32%)
leucine-rich repeat 198..219 CDD:275380 5/20 (25%)
leucine-rich repeat 220..241 CDD:275380 1/6 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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