DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3494 and lrrc40

DIOPT Version :9

Sequence 1:NP_611915.1 Gene:CG3494 / 37903 FlyBaseID:FBgn0035008 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001011310.1 Gene:lrrc40 / 496765 XenbaseID:XB-GENE-968689 Length:605 Species:Xenopus tropicalis


Alignment Length:202 Identity:75/202 - (37%)
Similarity:117/202 - (57%) Gaps:2/202 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RILQVSKAQISEVPMEVFEAAQQELVNIVSLDGNRLLEMPKDLPLLSEHLTQLVLNKNQISFVPT 102
            :.|:..:.|.|.:|..||.|.....:..|:...|:|.|:|..:..:.:.:..:.|..|:||.:..
 Frog   405 KTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIVEMKDSVCDVNLGFNKISSISL 469

  Fly   103 NISQYSKLTNLSLSNNLLCDLPMELGGLRLLRNLDISHNRFRQLPRCIYELERLETLSAHDNQIR 167
            |:....|||::.:.||:|..||.|:..:..|:::.:|.|||:..|..:|.:..|||:....|||.
 Frog   470 NLCMLLKLTHIDMRNNVLTSLPSEMEAMTRLQSVILSFNRFKHFPDVLYRIPTLETILISSNQIG 534

  Fly   168 AIDASESGLGGMRELKRLNLGNNDIQIVPPILGKMQNLVELELWGNPFRQPRHQILSMGTPALLS 232
            :||.::  |..|.:|..|:|.|||:..:||.||..::|..|.|.|||||.||..||:.||.|:|.
 Frog   535 SIDPTQ--LIKMTKLSTLDLQNNDLLQIPPALGNCESLRALHLEGNPFRNPRAAILAKGTVAVLE 597

  Fly   233 YLRTRIP 239
            |||:|||
 Frog   598 YLRSRIP 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3494NP_611915.1 LRR <34..>231 CDD:227223 68/192 (35%)
leucine-rich repeat 38..62 CDD:275380 7/23 (30%)
leucine-rich repeat 63..86 CDD:275380 5/22 (23%)
LRR_4 85..124 CDD:289563 11/38 (29%)
leucine-rich repeat 87..109 CDD:275380 5/21 (24%)
leucine-rich repeat 110..133 CDD:275380 8/22 (36%)
leucine-rich repeat 134..155 CDD:275380 6/20 (30%)
leucine-rich repeat 156..181 CDD:275380 10/24 (42%)
leucine-rich repeat 182..204 CDD:275380 10/21 (48%)
lrrc40NP_001011310.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
LRR <82..348 CDD:227223
LRR 1 83..104
leucine-rich repeat 84..106 CDD:275380
LRR 2 106..127
leucine-rich repeat 107..129 CDD:275380
LRR 3 129..151
leucine-rich repeat 130..152 CDD:275380
LRR 4 152..173
leucine-rich repeat 153..175 CDD:275380
LRR 5 175..196
leucine-rich repeat 176..198 CDD:275380
LRR 6 198..219
leucine-rich repeat 199..221 CDD:275380
LRR 7 221..242
leucine-rich repeat 222..244 CDD:275380
internalin_A 238..>583 CDD:380193 61/179 (34%)
LRR 8 244..265
leucine-rich repeat 245..266 CDD:275380
LRR 9 266..287
leucine-rich repeat 267..290 CDD:275380
LRR 10 290..311
leucine-rich repeat 291..313 CDD:275380
LRR 11 313..335
leucine-rich repeat 314..336 CDD:275380
LRR 12 336..357
leucine-rich repeat 337..355 CDD:275380
leucine-rich repeat 363..476 CDD:275380 17/70 (24%)
LRR 13 429..450 5/20 (25%)
LRR 14 453..475 5/21 (24%)
LRR 15 476..497 9/20 (45%)
leucine-rich repeat 477..522 CDD:275380 15/44 (34%)
LRR 16 499..520 7/20 (35%)
leucine-rich repeat 500..513 CDD:275380 5/12 (42%)
LRR 17 522..543 9/22 (41%)
leucine-rich repeat 523..546 CDD:275380 10/24 (42%)
LRR 18 546..567 10/20 (50%)
leucine-rich repeat 547..569 CDD:275380 10/21 (48%)
LRR 19 569..590 12/20 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D295141at33208
OrthoFinder 1 1.000 - - FOG0005608
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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