DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3494 and Lrrc30

DIOPT Version :9

Sequence 1:NP_611915.1 Gene:CG3494 / 37903 FlyBaseID:FBgn0035008 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001028512.2 Gene:Lrrc30 / 240131 MGIID:2685172 Length:300 Species:Mus musculus


Alignment Length:231 Identity:68/231 - (29%)
Similarity:105/231 - (45%) Gaps:34/231 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 ILQVSKAQISEVPMEVFEAAQQELVNIVSLD--GNRLLEMPKDLPLLSEHLTQLVLNKNQISFVP 101
            :|:|.|..:|...:.|.......|..||.|:  ||.|..:|:::.|| :.|..|.||.|.::.||
Mouse    69 LLEVQKLNLSHNQLRVLPPEVGRLTRIVVLNLCGNCLKSLPREVSLL-QSLKVLFLNMNCLAEVP 132

  Fly   102 TNISQYSKLTNLSLSNNLLCDLPMELGGLRLLRNLDISHNRFRQLPRCIYELERLETLSAHDNQI 166
            ..:|....|..||:|:|.|..||.....|..||.|::|:|.|..:|.|::.|:.|:.|....|::
Mouse   133 AELSLCRNLEVLSMSHNCLSQLPASFADLSRLRKLNLSNNYFAHIPLCVFSLKELDFLHVGSNRL 197

  Fly   167 RAIDASESGLGGMR--------------------ELKRLNLGNNDIQIVPPILGKMQNLVELELW 211
            ..|..|...|..::                    .|:.|||.|||||.:|..|..:..|..: .|
Mouse   198 ENIAESIQCLASLQIFIAESNNIHSFPRSLCLVTSLELLNLNNNDIQTLPDELYLLCRLGRI-AW 261

  Fly   212 G----------NPFRQPRHQILSMGTPALLSYLRTR 237
            .          ||..:|..:::..|...|.|||:.:
Mouse   262 NPMDKGLHISHNPLSKPLPELVEGGLEMLYSYLKDK 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3494NP_611915.1 LRR <34..>231 CDD:227223 64/223 (29%)
leucine-rich repeat 38..62 CDD:275380 5/22 (23%)
leucine-rich repeat 63..86 CDD:275380 9/24 (38%)
LRR_4 85..124 CDD:289563 14/38 (37%)
leucine-rich repeat 87..109 CDD:275380 8/21 (38%)
leucine-rich repeat 110..133 CDD:275380 9/22 (41%)
leucine-rich repeat 134..155 CDD:275380 8/20 (40%)
leucine-rich repeat 156..181 CDD:275380 6/44 (14%)
leucine-rich repeat 182..204 CDD:275380 11/21 (52%)
Lrrc30NP_001028512.2 LRR 1 47..69 68/231 (29%)
LRR 2 70..92 5/21 (24%)
leucine-rich repeat 72..94 CDD:275380 5/21 (24%)
LRR 3 94..115 7/20 (35%)
leucine-rich repeat 95..117 CDD:275380 9/22 (41%)
LRR 4 116..138 8/21 (38%)
LRR_8 117..174 CDD:290566 22/56 (39%)
leucine-rich repeat 118..140 CDD:275380 8/21 (38%)
LRR 5 139..161 8/21 (38%)
LRR_4 140..178 CDD:289563 15/37 (41%)
leucine-rich repeat 141..163 CDD:275380 9/21 (43%)
LRR 6 162..184 8/21 (38%)
leucine-rich repeat 164..186 CDD:275380 9/21 (43%)
LRR 7 186..207 5/20 (25%)
leucine-rich repeat 187..209 CDD:275380 6/21 (29%)
LRR 8 209..230 0/20 (0%)
leucine-rich repeat 210..228 CDD:275380 0/17 (0%)
LRR 9 231..253 11/21 (52%)
LRR 10 261..286 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844430
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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