DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3492 and rct1

DIOPT Version :9

Sequence 1:NP_611914.1 Gene:CG3492 / 37902 FlyBaseID:FBgn0035007 Length:404 Species:Drosophila melanogaster
Sequence 2:NP_595894.1 Gene:rct1 / 2539942 PomBaseID:SPBC17G9.05 Length:432 Species:Schizosaccharomyces pombe


Alignment Length:104 Identity:19/104 - (18%)
Similarity:43/104 - (41%) Gaps:8/104 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 NTYLPPPKVQIEGNGMELSYMEMLTALYKKSNNTLRTFTKSPERLAAGRWRNANLA-----REKE 181
            |..:...::.::.:.....|.:...:...:..::.|:..:...|.:.||:..:|..     |.||
pombe   307 NVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKE 371

  Fly   182 RRQLEKNKEFHKGGELFDPEAGKSKRY-KPKSSGSFSCE 219
            |...:....|.  .|.|....|..:.| |.:::|:.:|:
pombe   372 RDHRDDQSSFR--NERFSNYYGDDRSYHKRRNTGNKNCD 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3492NP_611914.1 cyclophilin 249..388 CDD:294131
rct1NP_595894.1 cyclophilin_RRM 4..176 CDD:238902
RRM 151..417 CDD:223796 19/104 (18%)
RRM_PPIL4 241..323 CDD:240681 1/15 (7%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0652
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.