DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgam5-2 and tigar

DIOPT Version :9

Sequence 1:NP_611911.1 Gene:Pgam5-2 / 37899 FlyBaseID:FBgn0035004 Length:280 Species:Drosophila melanogaster
Sequence 2:NP_001120569.1 Gene:tigar / 100145723 XenbaseID:XB-GENE-1008472 Length:275 Species:Xenopus tropicalis


Alignment Length:69 Identity:22/69 - (31%)
Similarity:37/69 - (53%) Gaps:12/69 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 IILVRHGEYTRTPN---------GSHLTELGRRQAERTGQRLREMGLSWDHVVASTMPRAEETAM 136
            :.:||||| ||...         ...|:|:|.:||:..|:.|  ..:.:.||.:|.:.||::||.
 Frog     6 LTIVRHGE-TRYNKEKLLQGQGIDEPLSEIGFKQADAVGRFL--SNVRFTHVFSSDLIRAKQTAC 67

  Fly   137 IILK 140
            .|::
 Frog    68 AIME 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgam5-2NP_611911.1 HP_PGM_like 80..245 CDD:132718 22/69 (32%)
tigarNP_001120569.1 His_Phos_1 6..>141 CDD:278716 22/69 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1112626at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.