DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and slc6a13

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001072913.1 Gene:slc6a13 / 780375 XenbaseID:XB-GENE-5947897 Length:601 Species:Xenopus tropicalis


Alignment Length:603 Identity:251/603 - (41%)
Similarity:364/603 - (60%) Gaps:35/603 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 DHTTPAKV--------TDPL---APKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGN 96
            |:..|..|        |.||   .||:.:.:.::       .|..|..|.||:|:|.|..:.|||
 Frog     2 DNKVPGAVSNGYCVPPTKPLMEKEPKMEDGDMMI-------ERGQWNNKVEFVLSVAGEIIGLGN 59

  Fly    97 VWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAIC 161
            ||||||:||:||||||.:||.:||...|:|:|::|.||||:...|.::.|::|||..:|:||:..
 Frog    60 VWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTAWRKICPLFEGIGYSSQ 124

  Fly   162 LIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQV----TSENFTELATSPAKE 222
            :|.:.:..||..::.||::|||.||||:|||.||.:.||||||:..    ::.|.|...||...|
 Frog   125 VIVMLLNCYYIVVLAWALFYLFNSFTSELPWASCGHSWNTENCLDFYKGNSTHNVTLNGTSSVIE 189

  Fly   223 FFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIIL 287
            |:||:||..  .:|:|.:|.:...||||:...:::.||.:||||:|.||||:.||..||::||:|
 Frog   190 FWERRVLRI--SDGIDNIGGLHWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLIVL 252

  Fly   288 LVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRD 352
            |:||||||||..||::||.|:..:|::.:||:||.:|||||.....|.|.||.||||:|||||||
 Frog   253 LIRGVSLPGALTGIQFYLYPDLSRLQDPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRD 317

  Fly   353 ALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSII 417
            .:....:|..|||:|||.|||:||:||..|...|..|...||||.||.||.|::.|..|..|:..
 Frog   318 CVALCFLNSGTSFVAGFAIFSILGFMAEEQGVHISDVAESGPGLAFIAYPRAVSMMPFSPLWACF 382

  Fly   418 FFLMLITLGLDSTFGGLEAMITALCDEYPRVIGR--RRELFVLLLLAFIFLCALPTMTYGGVVLV 480
            ||.|:|.|||||.|..:|:::||:.|.||.:..:  ||||.:|.:....||..|..:|.||:.:.
 Frog   383 FFFMVILLGLDSQFVCVESLVTAVVDMYPTIFRKKNRRELLILGVSMISFLVGLIMLTEGGMYVF 447

  Fly   481 NFLNVY-GPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIF 544
            ...:.| ..|:.:|||...|...|.|.||.|.|...||.|:|.:|....:.||.:::|...:..|
 Frog   448 QLFDYYAASGMCLLFVAIFETLCVGWVYGADNFYDKVEHMIGYRPTGIIKYCWLFVTPAVCMATF 512

  Fly   545 IFSIMGYKEM-LGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQPED 608
            :||::.|..: ..:.|.||.|...:||.:..||::|||:::.|| ....||...:|.::...|:.
 Frog   513 LFSLVKYTPLTYNKHYVYPWWGDAIGWLLALSSMVCIPLWVGYK-LSTIKGSLMERFRQLTFPDP 576

  Fly   609 N------CGSVVPGQQGT 620
            :      |..:....|||
 Frog   577 DLPQKTQCEPLSQTAQGT 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 238/540 (44%)
slc6a13NP_001072913.1 SLC5-6-like_sbd 37..579 CDD:382020 239/544 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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